View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_12 (Length: 464)
Name: NF2210_low_12
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 41861428 - 41861010
Alignment:
| Q |
16 |
aatagatttaggaagtaatcttagcaacaaaagaaaagttcaaatcatttgcaggtcgtaatattctccagcctttaattcatgcccctggtgcatgaaa |
115 |
Q |
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| T |
41861428 |
aatagatttaggaagtaatcttagcaacaaaagaaaagttcaaatcatttgcaggtcgtaatattctcc-----------------cctggtgcatgaaa |
41861346 |
T |
|
| Q |
116 |
aaggcattctaagcatggctctcctcagcattgtagtgaaataatgacaacgatacatcaaaatcagaagtgatatctgatcaaatatagtgcatccatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41861345 |
aaggcattctaagcatggctctcctcagcattgtagtgaaataatgacaacgatacatcaaaatcagaagtgatatctgatcaaatatagtgcatccatt |
41861246 |
T |
|
| Q |
216 |
gatattaaccattataaaaagagctagttaagttttaatatgttctaaaatcgcaaaagaaaatg--agagattaggagtaaaactcaaaatagcaacaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
41861245 |
gatattaaccattataaaaagagctagttaagttttaatatgttctaaaatcgcaaaagaaaatgacagagattaggaataaaactcaaaatagcaacaa |
41861146 |
T |
|
| Q |
314 |
aatccaatttctgatgacagtgacagagttgttgaaactaattttgatcttcagcttgccattgtgtttaacatggtgtctgttcccatcagcattcact |
413 |
Q |
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| T |
41861145 |
aatccaatttctgatgacagtgacagagttgttgaaactaattttgatcttcagcctgccattgtgtttaacatggtgtttgttcccatcagcattcact |
41861046 |
T |
|
| Q |
414 |
aaccaccaatgatcgcctagctcatcgaaaaaacat |
449 |
Q |
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| T |
41861045 |
aaccaccaatgatcgcctagctcatcgaaaaaacat |
41861010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 96 - 445
Target Start/End: Complemental strand, 41889197 - 41888827
Alignment:
| Q |
96 |
catgcccctggtgcatgaaaaaggcattctaagcatggctctcctcagcatt--------gtagtgaa--ataatgacaacgatacatcaaaatcagaag |
185 |
Q |
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| T |
41889197 |
catgcccctggtgcatgaaaaaggtattctaagcatgactctcctcagcatttaaaattggtttggcagcataatgataatgatacatcaacatatgaag |
41889098 |
T |
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| Q |
186 |
tgatatctgatcaaatatagtgcatccattgatattaaccattataaaaagagctagttaagttttaatatgttctaaaatcgcaaaagaaaatgaga-- |
283 |
Q |
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| T |
41889097 |
tgatatcagatcaaatatagtgcatccattaatattacccattataaaaagagctagttgagttttagtgagttctaaaatcgcaaaagaaaacaacata |
41888998 |
T |
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| Q |
284 |
gattaggagtaaaactcaaaatagcaacaaaatccaatt-----------tctgatgacagtgacagagttgttgaaactaattttgatcttcagcttgc |
372 |
Q |
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| T |
41888997 |
gattaggaatataacttaaaatagcaacaaaatccaagtaaagcttaaattctgatgacagtgacacagttgttgaaactatttttgatcttcagcttgt |
41888898 |
T |
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| Q |
373 |
cattgtgtttaacatggtgtctgttcccatcagcattcactaaccaccaatgatcgcctagctcatcgaaaaa |
445 |
Q |
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| T |
41888897 |
cattgtgtttaaca--gtgtttgttcccatcagcattcactaatctccaacgatcgcccagctcatcaaaaaa |
41888827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 156 - 439
Target Start/End: Complemental strand, 41880555 - 41880263
Alignment:
| Q |
156 |
ataatgacaacgatacatcaaaatcagaagtgatatctgatcaaatatagtgcatccattgatattaaccattataaaaagagctagttaagttttaata |
255 |
Q |
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||||||| || |||||||||| || || |||||||| |||||||||||||||||||||| || |||||||| | ||||| | |||| |||||| ||| |
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| T |
41880555 |
ataatgataatgatacatcaacatacgatgtgatatcagatcaaatatagtgcatccattaatgttaaccataaaaaaaacac--agttgagtttttata |
41880458 |
T |
|
| Q |
256 |
tgttctaaaatcgcaaaagaaaatga--gagattaggagtaaaactcaaaatagcaacaaaatccaatt-----------tctgatgacagtgacagagt |
342 |
Q |
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| T |
41880457 |
tgttctaaaattttaaaagaaaatgacggaaattaggaatataactcaa--tagcaacaagatccaagtaaagcttaaattctgatgacattgacagagt |
41880360 |
T |
|
| Q |
343 |
tgttgaaactaattttgatcttcagcttgccattgtgtttaacatggtgtctgttcccatcagcattcactaaccaccaatgatcgcctagctcatc |
439 |
Q |
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||||||||||| |||| |||||||||||| |||||||||| ||| | ||| | |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41880359 |
tgttgaaactattttttatcttcagcttgtcattgtgtttgacaagatgtttattcccatcagcattcactaatcaccaatgatcgcctagctcatc |
41880263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 41880625 - 41880574
Alignment:
| Q |
96 |
catgcccctggtgcatgaaaaaggcattctaagcatggctctcctcagcatt |
147 |
Q |
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|||||||||||||||||| | |||||||||||||||| ||||||||| |||| |
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| T |
41880625 |
catgcccctggtgcatgagagaggcattctaagcatgactctcctcaacatt |
41880574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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