View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210_low_13 (Length: 457)
Name: NF2210_low_13
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 51112957 - 51112520
Alignment:
| Q |
1 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112957 |
tgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaatatgcttcagacgct |
51112858 |
T |
|
| Q |
101 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112857 |
gcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgctgctgagaaaacca |
51112758 |
T |
|
| Q |
201 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaaagctatgcagatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112757 |
aaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaaagctatgcagatga |
51112658 |
T |
|
| Q |
301 |
tgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112657 |
tgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgct |
51112558 |
T |
|
| Q |
401 |
actaatgctgctcagaaggctgcacagaaagccaaaga |
438 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51112557 |
actgatgctgctcagaaggctgcacagaaagccaaaga |
51112520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University