View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_14 (Length: 422)
Name: NF2210_low_14
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_14 |
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| [»] scaffold2113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 28048375 - 28047973
Alignment:
| Q |
1 |
tagttcctccttcagttaatttaggttgcatttgattctcttttcattctatgtttgacatcacagtggaatgcaatcagaattgtgactaaatgacata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28048375 |
tagttcctccttcagttaatttaggttgcatttgattctcttttcattctatgtttgacatcacagtggaatgcaatcagaattgtgactaaatgacata |
28048276 |
T |
|
| Q |
101 |
aattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataagctatttaattaagcgcttatatcatacacatgcttatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28048275 |
aattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataagctatttaattaagcgcttatatcatacacatgcttatcat |
28048176 |
T |
|
| Q |
201 |
ataaatgttaaaaggtaagtcacatagtctatctatctctcccaaattgcatgaagcataatcaaatgagaacagaacgaacacattctcatcgccgttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28048175 |
ataaatgttaaaaggtaagtcacatagtctatctatctctcccaaattgcatgaagcataatcaattgagaacagaacgaacacattctcatcgccgttc |
28048076 |
T |
|
| Q |
301 |
ggcgtatgacattcatagtcctctgcgcattctcatcatccaggatacaattgcatgcagattttcctgcaccattttctgaggaagtacctgcaggcat |
400 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28048075 |
agcgtatgacattcatagtcctatgcgcattctcatcatccaggatacaattgcatgcagattttcctgcgccattttctgaggaagtacctgcaggcat |
28047976 |
T |
|
| Q |
401 |
gtt |
403 |
Q |
| |
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||| |
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| T |
28047975 |
gtt |
28047973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 128 - 405
Target Start/End: Complemental strand, 28077598 - 28077321
Alignment:
| Q |
128 |
aaattaggtattgcatttatcggtttggataagctatttaattaagcgcttatatcatacacatgcttatcatataaatgtt-aaaaggtaagtcacata |
226 |
Q |
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|||||||||||| |||||| | |||||||||| || ||||||||| ||||||||||||||||||||| | |||||||||| ||||||||| ||||||| |
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| T |
28077598 |
aaattaggtattacatttacctgtttggataaactccttaattaagtgcttatatcatacacatgcttgccgtataaatgttaaaaaggtaaatcacata |
28077499 |
T |
|
| Q |
227 |
gtctatctatctctcccaaattgcatgaagcataatcaaatgagaacagaacgaacacattctcatcgccgttcggcgtatgacattcatagtcctctgc |
326 |
Q |
| |
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|||| | |||||| ||||||| ||||| |||||| || |||||||||||||||||||||||||| ||| || || | ||| ||| ||||||| | |
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| T |
28077498 |
gtct-catttctctcgcaaattggatgaaccataataaattgagaacagaacgaacacattctcattcccgatcagcaaacgacgttcttagtcctgctc |
28077400 |
T |
|
| Q |
327 |
gcattctcatcatccaggatacaattgcatgcagattttcctgcaccattttctgaggaagtacctgcaggcatgtttg |
405 |
Q |
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| T |
28077399 |
gcattgtaatcatccaggatacaattgcatgcagattttcctgcgacatttgctgcgggaatacctgcgggcatctttg |
28077321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 236 - 405
Target Start/End: Complemental strand, 28036911 - 28036742
Alignment:
| Q |
236 |
tctctcccaaattgcatgaagcataatcaaatgagaacagaacgaacacattctcatcgccgttcggcgtatgacattcatagtcctctgcgcattctca |
335 |
Q |
| |
|
|||||||||||||| ||||| || |||||| ||||||||||| ||||||||||||||| |||||| || || | | ||| ||||||| |||||||| | |
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| T |
28036911 |
tctctcccaaattggatgaaccacaatcaattgagaacagaatgaacacattctcatctccgttcagcatacggcgttcttagtcctactcgcattctaa |
28036812 |
T |
|
| Q |
336 |
tcatccaggatacaattgcatgcagattttcctgcaccattttctgaggaagtacctgcaggcatgtttg |
405 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| | ||||||||| |
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| T |
28036811 |
tcatccaggatacaattccatgcagattttcctgcaccatttgctgcagaagtacctgtatgcatgtttg |
28036742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 28004838 - 28004751
Alignment:
| Q |
90 |
taaatgacataaattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataagctatttaattaagcgct |
177 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| ||||||||||||| |
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| T |
28004838 |
taaatgacataaattcctttaattgagaaaaacttaagaaattaggtattgcatttacctgtttggataaactacttaattaagcgct |
28004751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 403
Target Start/End: Complemental strand, 28004578 - 28004406
Alignment:
| Q |
236 |
tctctcccaaattgcatgaagcataatcaaatgagaacagaacgaacacattctcatcgccgttcggcgtat-----gacattcatagtcctctgcgcat |
330 |
Q |
| |
|
||||| |||| ||||||||| ||||||||| |||||| ||| ||||||||| ||||||| |||| | ||| ||| | | ||||||| || ||| |
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| T |
28004578 |
tctcttccaatttgcatgaaccataatcaattgagaaaggaatgaacacattatcatcgctgttcagagtaccgttcgacgtccttagtcctacgcacat |
28004479 |
T |
|
| Q |
331 |
tctcatcatccaggatacaattgcatgcagattttcctgcaccattttctgaggaagtacctgcaggcatgtt |
403 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
28004478 |
tctcatcatccaggatacaatttcatacagattttcctgcaccatttgcagaggaagtacctgcaggcatgtt |
28004406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 27923922 - 27923835
Alignment:
| Q |
72 |
tgcaatcagaattgtgactaaatgacataaattcctttaattgagaaaaatttaagaaattaggtattgcatttatcggtttggataa |
159 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| | |||||||||| |
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| T |
27923922 |
tgcaatcaggattgtgactaaatgacataaattcctttaattgtgaaaaacttaagaaattagttattgcatttacctgtttggataa |
27923835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28077694 - 28077594
Alignment:
| Q |
1 |
tagttcctccttcagttaatttaggttgcatttgattctcttttcattctatgtttgacatcacagtggaatgcaatcagaattgtgactaaatgacata |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||| |||||||| |||||| |||||| ||||||| |||||| |||||||||||| ||||| |
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| T |
28077694 |
tagttcctccttcagtt---ttaggttgcacctgcttctgttttcatttaatgttttcaatcacattggaatgtaatcaggattgtgactaaacaacata |
28077598 |
T |
|
| Q |
101 |
aatt |
104 |
Q |
| |
|
|||| |
|
|
| T |
28077597 |
aatt |
28077594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2113 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold2113
Description:
Target: scaffold2113; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 405
Target Start/End: Complemental strand, 521 - 358
Alignment:
| Q |
247 |
ttgcatgaagcataatcaaatgagaacagaacgaacacattctcatcgccgttcggcgtat-----gacattcatagtcctctgcgcattctcatcatcc |
341 |
Q |
| |
|
||||||||| ||||||||| |||||| |||| ||||||||| ||||||| |||| ||||| ||| ||| |||||||| | ||||||||||||||| |
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| T |
521 |
ttgcatgaaccataatcaattgagaatagaaagaacacattatcatcgctgttcagcgtaccgcacgacgttcttagtcctccgtgcattctcatcatcc |
422 |
T |
|
| Q |
342 |
aggatacaattgcatgcagattttcctgcaccattttctgaggaagtacctgcaggcatgtttg |
405 |
Q |
| |
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||||||||||| |||||||||||||||| |||||| || |||||||||| | ||||| |||| |
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|
| T |
421 |
aggatacaatttgatgcagattttcctgccccatttgcttcggaagtacctacgggcatttttg |
358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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