View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_16 (Length: 421)
Name: NF2210_low_16
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 32326272 - 32325869
Alignment:
| Q |
18 |
aacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgatgatccttttaggcaaattatggaagaggnnn |
117 |
Q |
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| T |
32326272 |
aacttatcaacccaaagaggttttgtgacaaaattgaaatctgggttcaaagaagcacttttccctgatgatccttttaggcaaattatggaagaggaaa |
32326173 |
T |
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| Q |
118 |
nnnnntctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattattctttgagattatttttctctgacttaattgc |
217 |
Q |
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| T |
32326172 |
aaaaatctcgtaggttgattaaaggggtgcaatattttattccaatctttgagtggttaccaaattattctttgagattatttttctctgacttaattgc |
32326073 |
T |
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| Q |
218 |
tggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcctctcattggcctttgtaagtcattcttatca |
317 |
Q |
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| T |
32326072 |
tggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaatcttcctcctctcattggcctttgtaagtcattcttatta |
32325973 |
T |
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| Q |
318 |
ttacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagattatcacttcaatttttcatttcactcttttaaacctaaa |
417 |
Q |
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||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32325972 |
ttacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagattatcacttcaatttttcatttcactcttttaaacctaaa |
32325873 |
T |
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| Q |
418 |
gtat |
421 |
Q |
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| T |
32325872 |
gtat |
32325869 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
213 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
286 |
Q |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
243 |
attcctcaaggcattagttatgccaaacttgc |
274 |
Q |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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