View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_20 (Length: 368)
Name: NF2210_low_20
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 34415769 - 34416107
Alignment:
| Q |
15 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415769 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtca |
34415868 |
T |
|
| Q |
115 |
actcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatttgtgtgaacacatttactgaattgaaaataactggccagaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415869 |
actcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatttgtgtgaacacatttactgaattgaaaataactggccagaga |
34415968 |
T |
|
| Q |
215 |
ctatgattctaaattagttaagttttgataagcagagagtcttggagtactgccatgatcctaaaactcaacagattatgatggatgagattttgcagtg |
314 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34415969 |
ctatgattctaaattagttgagttttgataagcagagagtcttggagtactgccatgatcctaaaactcaacagattatgatggatgagattttgcagtg |
34416068 |
T |
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| Q |
315 |
tgtttccatgctagctcaagatcaatatgggaactatgt |
353 |
Q |
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| T |
34416069 |
tgtttccatgctagctcaagatcaatatgggaactatgt |
34416107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 155706 - 155459
Alignment:
| Q |
15 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
155706 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaggtttatcgtttcaacgttttataaccaagttgtgacgttgtca |
155607 |
T |
|
| Q |
115 |
actcatccatatggttgccgtgttatacaggtgacaaattcatccttttgattttatttgtgtgaacacatttactgaattgaaaataactggccagaga |
214 |
Q |
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||||||||||| | || |||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| | |
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| T |
155606 |
gctcatccatatagctgtcgtgttatacaggtgacatatccatcctttttattttatttgtgtgaacacatttactgaattgataataactggcaagaaa |
155507 |
T |
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| Q |
215 |
ctatgattctaaattagttaagttttgataagcagagagtcttggagt |
262 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
155506 |
ctatgattctaaactagttaagttttgataagcagagagtcttggagt |
155459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 24138941 - 24139072
Alignment:
| Q |
15 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtca |
114 |
Q |
| |
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|||||| || |||||||| ||||| |||||||||||||| ||||| || | ||| | ||||| |||||||| |||| || ||||||||||| | ||| |
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| T |
24138941 |
gaatggtaatcatgtcattcagaaatgtattgaatgtgtccctgaagaggcgatcgactttattgtttcaacatttttcgatcaagttgtgacactctca |
24139040 |
T |
|
| Q |
115 |
actcatccatatggttgccgtgttatacaggt |
146 |
Q |
| |
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|| |||||||| ||||| ||||| |||||||| |
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| T |
24139041 |
acccatccatacggttgtcgtgtgatacaggt |
24139072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 41721268 - 41721399
Alignment:
| Q |
15 |
gaatggaaaccatgtcatccagaagtgtattgaatgtgtacctgaggatgaaatcaagtttatcgtttcaacgttttatgaccaagttgtgacgttgtca |
114 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||| |||||||| |||| ||| | ||||| | ||||| |||| ||| ||||||||||| | || |
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| T |
41721268 |
gaatggtaaccatgtcattcagaagtgtattgaatgcgtacctgaagatgcaattgattttattatctcaactttttttgatcaagttgtgacactatct |
41721367 |
T |
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| Q |
115 |
actcatccatatggttgccgtgttatacaggt |
146 |
Q |
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|| ||||||||||||||||| || |||||||| |
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| T |
41721368 |
acccatccatatggttgccgggtgatacaggt |
41721399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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