View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210_low_27 (Length: 317)
Name: NF2210_low_27
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_27 |
 | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 12636193 - 12635943
Alignment:
| Q |
14 |
aacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggacctatctcgagtcatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12636193 |
aacatgatgactcacctctaaaatatataatgtaattaactcattataatctttatctacttggaatattatattctcttggacctatctcgagtcatta |
12636094 |
T |
|
| Q |
114 |
cattccattggtcttacacaaacaccttgtcctcaaggtggtagttaaatagctcacatcatactcattcttcatagcattcaattccacttcaattaga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12636093 |
cattccattggtcttacacaaacaccttgtcctcaaggtgg----taaatagctcacatcatactcattcttcatagcactcaattccacttcaattaga |
12635998 |
T |
|
| Q |
214 |
cttggatgtttaacatatttgacccatgaaaaagtaccaagtaacgctccaacaa |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12635997 |
cttggatgtttaacatatttgacccatgaaaaagtaccaagtaacgctccaacaa |
12635943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24899333 - 24899084
Alignment:
| Q |
1 |
tagattcttttagaacatgatgactcacctctaaaatat--ataatgtaattaactcatcataatcttta-tctacttggattattatattctcttggac |
97 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||| |
|
|
| T |
24899333 |
tagatccttttaaaacatgatgactcacctctaaaatatgtataattcaattaactcatcataatctttaatctagttgagctattatattctattgggt |
24899234 |
T |
|
| Q |
98 |
ctatctcgagtcattacattccattggtcttacacaaacaccttg-----tcctcaaggtggtagttaaatagctcacatcatactcattcttcatagca |
192 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24899233 |
ctatcttagatctttacattccattggtcttgcacaaacaccttaccttatcatcaaggtggtaattaaatagctcacatcatactcattcttcatagca |
24899134 |
T |
|
| Q |
193 |
ttcaattccacttcaattagacttggatgtttaacatatttgacccatga |
242 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
24899133 |
ttcaattccacttcaattggactttgatgtttaacatatttgacccatga |
24899084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 56329164 - 56328958
Alignment:
| Q |
32 |
taaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggacctatctcgagtcattacattccattggtcttaca |
131 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||| ||||||||| || | |||| | |||| ||||| || |||||||||||||| || | || |
|
|
| T |
56329164 |
taaaatatctaatacaactaactcatcataatctttacctacttggactactctattatattgggtttatcttaggttattacattccattgatcatgca |
56329065 |
T |
|
| Q |
132 |
caaacaccttgtcctcaaggtggtagttaaatagctcacatcatactcattcttcatagcattcaattccacttcaattagacttggatgtttaacatat |
231 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||| |||||||| ||||||||| |||||| ||||||||| |||| || ||||| |||| ||||||||| |
|
|
| T |
56329064 |
caaacaccttatcctcgaggtgataattaaaaagctcacaatatactcattgttcata-aattcaattc--tttcatttggactttgatg-ttaacatat |
56328969 |
T |
|
| Q |
232 |
ttgacccatga |
242 |
Q |
| |
|
||||||||||| |
|
|
| T |
56328968 |
ttgacccatga |
56328958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 41496063 - 41495957
Alignment:
| Q |
4 |
attcttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatcta-cttggattattatattctcttggacctatc |
102 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||| || ||||| | |||||||||||||||||||||| |
|
|
| T |
41496063 |
attcttctagaacatgatgactaatctctaaaatatat---gcaattaactcatcataatctttatttagcttggct-attatattctcttggacctatc |
41495968 |
T |
|
| Q |
103 |
tcgagtcatta |
113 |
Q |
| |
|
| | ||||||| |
|
|
| T |
41495967 |
ttgggtcatta |
41495957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 18102844 - 18102906
Alignment:
| Q |
14 |
aacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttgga |
78 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
18102844 |
aacatgatgactcacctctaatatatctaac--aactaactcatcataatctttacctacttgga |
18102906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 80 - 242
Target Start/End: Original strand, 22620909 - 22621070
Alignment:
| Q |
80 |
tattatattctcttggacctatctcgagtcattacattccattggtcttacacaaacaccttgtcctcaaggtggtagttaaatagctcacatcatactc |
179 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||||| || |||| || |||||||||||||||||||||||| ||||| ||||||||| ||| || |
|
|
| T |
22620909 |
tattatattctaatggacctatcttaattcattacattccactgttcttgcagaaacaccttgtcctcaaggtggtaattaaaaagctcacattatagtc |
22621008 |
T |
|
| Q |
180 |
attcttcatagcattcaattccacttcaattagacttggatgtttaacatatttgacccatga |
242 |
Q |
| |
|
||||||| || | |||||||||||| | |||||||| ||||||| || ||||||||||||| |
|
|
| T |
22621009 |
attcttcctaac-ttcaattccactctatttagactttaatgtttagcacatttgacccatga |
22621070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 37486177 - 37486294
Alignment:
| Q |
1 |
tagattcttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggaccta |
100 |
Q |
| |
|
||||| |||| |||| |||||| ||| |||||||| ||| |||| || |||||||||| | || ||| |||||||| ||||| |||| |||||||| || |
|
|
| T |
37486177 |
tagatcctttcagaatatgatggctcgcctctaaattatctaatacaactaactcatcacattccttagctacttgggttattttattttcttggactta |
37486276 |
T |
|
| Q |
101 |
tctcgagtcattacattc |
118 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
37486277 |
tcttgattcattacattc |
37486294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 38086090 - 38086245
Alignment:
| Q |
1 |
tagattcttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggaccta |
100 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| |||||||| ||||| || ||||||||||||||||||| ||||| || |||| ||| ||||||||| |
|
|
| T |
38086090 |
tagattctactagaatatgatgacccacctttaaaatatttaatgcaactaactcatcataatctttacatactttgactattctatcacattggaccta |
38086189 |
T |
|
| Q |
101 |
tctcgagtcattacattccattggtcttacacaaacaccttgtcctcaaggtggta |
156 |
Q |
| |
|
||| | ||||||||||||| ||| || | ||||||| || |||||||||||||||| |
|
|
| T |
38086190 |
tcttgggtcattacattcctttgttcctgcacaaactccctgtcctcaaggtggta |
38086245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 38086345 - 38086470
Alignment:
| Q |
107 |
gtcattacattccattggtcttacacaaacaccttgtcctcaaggtggtagttaaatagctcacatcatactcattcttcatagcattcaattccacttc |
206 |
Q |
| |
|
||||||||||| ||||||| || ||||||||| |||||| || |||||| ||||| || |||||| |||||||||||||| | ||||||||||||| | |
|
|
| T |
38086345 |
gtcattacatttcattggtgttgcacaaacacaatgtccttaatgtggtaattaaa-agttcacataatactcattcttcaca-aattcaattccactcc |
38086442 |
T |
|
| Q |
207 |
aattagacttggatgtttaacatatttg |
234 |
Q |
| |
|
| |||||||| |||||| || ||||||| |
|
|
| T |
38086443 |
atttagactttgatgttaaatatatttg |
38086470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 5411427 - 5411360
Alignment:
| Q |
1 |
tagattcttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatcttta |
68 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
5411427 |
tagatccttctagaacatgatgactcgcctctaaaatatctaatgcaaccaactcatcataatcttta |
5411360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 34330274 - 34330322
Alignment:
| Q |
20 |
atgactcacctctaaaatatataatgtaattaactcatcataatcttta |
68 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| ||||||||||||||| |
|
|
| T |
34330274 |
atgactcacctctaaaatatctaatacaactaattcatcataatcttta |
34330322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 16644461 - 16644571
Alignment:
| Q |
11 |
tagaacatgatgactcacctctaaaatatata----atgtaattaactcatcataatctttatctacttggattattatattctcttggacctatctcga |
106 |
Q |
| |
|
||||||||||| ||||||||||| |||||| | || |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| | |
|
|
| T |
16644461 |
tagaacatgattactcacctctataatatagatagaatacaattaactcatcataatctttatctacttgaattgttatattctcttgaacctatcttgg |
16644560 |
T |
|
| Q |
107 |
gtcattacatt |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
16644561 |
gtcattacatt |
16644571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 190
Target Start/End: Original strand, 45134833 - 45134991
Alignment:
| Q |
32 |
taaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggacctatctcgagtcattacattccattggtcttaca |
131 |
Q |
| |
|
|||||||| |||| || ||||||||| ||||||||| ||| || || || | |||| | ||| ||||||| ||||||| ||||||||| |||| || |
|
|
| T |
45134833 |
taaaatatctaatacaactaactcatcgtaatctttacctatttagactactttattatattgagcctatcttaggtcattatattccattgatcttgca |
45134932 |
T |
|
| Q |
132 |
caaacaccttgtcctcaaggtggtagttaaatagctcacatcatactcattcttcatag |
190 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| |||| |||| ||||||||||||||||| |
|
|
| T |
45134933 |
caaacaccttatcctcaatgtggtaattaaaaagcttacattatactcattcttcatag |
45134991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 37860453 - 37860515
Alignment:
| Q |
14 |
aacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttgga |
78 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || ||||||||||||||||||| ||||||||| |
|
|
| T |
37860453 |
aacatgatgactcacctctaatatatctaac--aactaactcatcataatctttacctacttgga |
37860515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 2845974 - 2846076
Alignment:
| Q |
12 |
agaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctacttggattattatattctcttggacctatctcgagtcat |
111 |
Q |
| |
|
|||||| ||| |||| ||| |||||||| ||||| ||||| || ||||||||||||| |||||| | |||| ||||||||| ||||||||| ||||||| |
|
|
| T |
2845974 |
agaacacgataactcgcctttaaaatatctaatgcaattaccttatcataatctttacctacttagcttatcctattctcttagacctatcttgagtcat |
2846073 |
T |
|
| Q |
112 |
tac |
114 |
Q |
| |
|
||| |
|
|
| T |
2846074 |
tac |
2846076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 47895879 - 47895811
Alignment:
| Q |
7 |
cttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctactt |
75 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||||| |||| || ||| ||||||||||||||| |||||| |
|
|
| T |
47895879 |
cttttagaatatgacgactcacatcttaaatatctaatacaactaattcatcataatctttacctactt |
47895811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 5505 - 5559
Alignment:
| Q |
108 |
tcattacattccattggtcttacacaaacaccttgtcctcaaggtggtagttaaa |
162 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5505 |
tcattacatcccattggtcttgcacaaacaccttgtccttaaggtggtaattaaa |
5559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 177531 - 177463
Alignment:
| Q |
7 |
cttttagaacatgatgactcacctctaaaatatataatgtaattaactcatcataatctttatctactt |
75 |
Q |
| |
|
||||||||| || ||||||||| |||||||||| |||| ||| |||||||||||||||||| |||||| |
|
|
| T |
177531 |
cttttagaaaatcatgactcacatctaaaatatctaatacaataaactcatcataatctttacctactt |
177463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University