View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_30 (Length: 302)
Name: NF2210_low_30
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 36271047 - 36271324
Alignment:
| Q |
11 |
cacagataaaatactaaaatgtttcaaataaaagcaaaaaagcagcatggacctataaaattgacatgtttgaattaagccaacctagaggaacgtgaaa |
110 |
Q |
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| T |
36271047 |
cacaaataaaatactaaaatgtttcaaataaaagcaaaaaagcagcatggacctataaaattgacatgtttgaattaagccaacctagaggaacgtgaaa |
36271146 |
T |
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| Q |
111 |
tgagacaaaaaagagtgattaaaggaaacccttttgttttgtttgtattttactacctttgatgctaaaacttgaagaccagcatacttaacatcccagc |
210 |
Q |
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| T |
36271147 |
tgagacaaaaaagagtgattaaaggaaacccttttgttttgtttgtattttactacctttgatgctaaaacttgaagaccagcatacttaacatcccagc |
36271246 |
T |
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| Q |
211 |
tgaattctgttatggaccaaccaataccaccaaatgtatgagcattagaaataatgtagtcaaaatattcttgtttgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36271247 |
tgaattctgttatggaccaaccaataccaccaaatgtatgagcattagaaataatgtagtcaaaatattcttgtttgt |
36271324 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 37041971 - 37041913
Alignment:
| Q |
186 |
agaccagcatacttaacatcccagctgaattctgttatggaccaaccaataccaccaaa |
244 |
Q |
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||||| ||||| || |||||||||||||| |||||||||||||||||| | |||||||| |
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| T |
37041971 |
agacctgcatatttgacatcccagctgaactctgttatggaccaaccagtgccaccaaa |
37041913 |
T |
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