View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2210_low_31 (Length: 302)

Name: NF2210_low_31
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2210_low_31
NF2210_low_31
[»] chr1 (4 HSPs)
chr1 (4-165)||(3981230-3981385)
chr1 (180-290)||(3981371-3981481)
chr1 (235-289)||(17006731-17006785)
chr1 (250-282)||(34159321-34159353)
[»] scaffold0268 (1 HSPs)
scaffold0268 (250-289)||(20101-20140)
[»] scaffold0119 (1 HSPs)
scaffold0119 (250-289)||(40389-40428)
[»] chr8 (2 HSPs)
chr8 (250-289)||(30369980-30370019)
chr8 (250-289)||(37251403-37251442)
[»] chr7 (1 HSPs)
chr7 (250-289)||(29912385-29912424)
[»] chr5 (3 HSPs)
chr5 (250-289)||(4061953-4061992)
chr5 (250-289)||(7333174-7333213)
chr5 (250-289)||(8128671-8128710)
[»] chr4 (2 HSPs)
chr4 (250-289)||(26290236-26290275)
chr4 (241-289)||(55049830-55049878)
[»] scaffold0012 (1 HSPs)
scaffold0012 (236-289)||(31262-31315)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 3981230 - 3981385
Alignment:
Q  4 tgtcacaatcttcatctcagtatgacgtggcgatgaggatagggtgtgtctgtgtggtgtccgtcttgtgaagcttatccacacaagagaaaaagtagaa 103  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||||||||| |||||||||||||||    
T  3981230 tgtcacaatcttcatctcagtatgatgtggcgatgaggatagggtgtg------tggtgtccgtcttgtgaagcttatccacacgagagaaaaagtagaa 3981323  T
Q  104 catgggcccaccctataaaattaacattaaatgccagccttcctaattcgtatcctatgaca 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3981324 catgggcccactctataaaattaacattaaatgccagccttcctaattcgtatcctatgaca 3981385  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 3981371 - 3981481
Alignment:
Q  180 tcgtatcctatgacattattctttatggattatagtatgatcctagatatccttctcaaacatggactacaatttcgtgatatttaaaatattaagtgaa 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  3981371 tcgtatcctatgacattattctttatggattagagtatgatcctagatacccttctcaaacacggactacaatttcttgatatttaaaatattaagtgaa 3981470  T
Q  280 gatgtgatatt 290  Q
    |||||||||||    
T  3981471 gatgtgatatt 3981481  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 17006785 - 17006731
Alignment:
Q  235 tcaaacatggactacaatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    |||||||  ||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  17006785 tcaaacacagactagaatttcgtgatatttaaaatattaagtaaagatttgatat 17006731  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 34159321 - 34159353
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagat 282  Q
    ||||||||||||||||||||||||||| |||||    
T  34159321 aatttcgtgatatttaaaatattaagtaaagat 34159353  T

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Target: scaffold0268 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 20140 - 20101
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  20140 aatttcgtgatatttaaaatattaagtaaagatttgatat 20101  T

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Target: scaffold0119 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 40389 - 40428
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  40389 aatttcgtgatatttaaaatattaagtaaagatttgatat 40428  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 30370019 - 30369980
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  30370019 aatttcgtgatatttaaaatattaagtaaagatttgatat 30369980  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 37251442 - 37251403
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  37251442 aatttcgtgatatttaaaatattaagtaaagatttgatat 37251403  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 29912385 - 29912424
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  29912385 aatttcgtgatatttaaaatattaagtaaagatttgatat 29912424  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 4061953 - 4061992
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  4061953 aatttcgtgatatttaaaatattaagtaaagatttgatat 4061992  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 7333213 - 7333174
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  7333213 aatttcgtgatatttaaaatattaagtaaagatttgatat 7333174  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 8128710 - 8128671
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  8128710 aatttcgtgatatttaaaatattaagtaaagatttgatat 8128671  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 26290275 - 26290236
Alignment:
Q  250 aatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  26290275 aatttcgtgatatttaaaatattaagtaaagatttgatat 26290236  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 55049830 - 55049878
Alignment:
Q  241 atggactacaatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    |||| ||| |||||| |||||||||||||||||||| ||||| ||||||    
T  55049830 atgggctagaatttcatgatatttaaaatattaagtaaagatttgatat 55049878  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 31315 - 31262
Alignment:
Q  236 caaacatggactacaatttcgtgatatttaaaatattaagtgaagatgtgatat 289  Q
    |||||| || ||| ||||||||||||||||||||||||| | ||||| ||||||    
T  31315 caaacacgggctagaatttcgtgatatttaaaatattaattaaagatttgatat 31262  T

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