View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_4 (Length: 852)
Name: NF2210_low_4
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 22517243 - 22517659
Alignment:
| Q |
17 |
acaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcaattttactctgctgctttaattgcaaaactgtga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
22517243 |
acaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcatttttactctgctgctttaattgcaaacctgtga |
22517342 |
T |
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| Q |
117 |
tgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtaga |
216 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22517343 |
tgaagaagggacctgatgcatcccaaaaagttatgcctccattatggtgtccagttatgtacaagtttttgatgtttgaaaatccagagaagttggtaga |
22517442 |
T |
|
| Q |
217 |
attcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaatactcatctgcagaataaaacaca |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
22517443 |
attcaagttaatcccacctttgtggtttgtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaatactcatctgcagaataaaacaca |
22517542 |
T |
|
| Q |
317 |
ccggtgttgttggagatgaatatttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaatgaggaagttgacttag |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
22517543 |
ccggtgttgttggagatgttcttttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcctttggtaaggagggagttgacttag |
22517642 |
T |
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| Q |
417 |
attggcctctcaattga |
433 |
Q |
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| T |
22517643 |
attggcctctcaattga |
22517659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 430 - 658
Target Start/End: Complemental strand, 37191548 - 37191319
Alignment:
| Q |
430 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
37191548 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacgacggagccattgtacacggcaatgagaacaacgaattcgaaacataa |
37191449 |
T |
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| Q |
530 |
aattgtgggagaaacgacagcgg-catcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtgg |
628 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
37191448 |
aattgtgggagaaacgacagcggaaatcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaacacattgaagtgg |
37191349 |
T |
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| Q |
629 |
ttaggtgagagtgattgaaattttacctca |
658 |
Q |
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| T |
37191348 |
ttaggtgagagtgattgaaattttacctca |
37191319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 430 - 658
Target Start/End: Original strand, 22517893 - 22518121
Alignment:
| Q |
430 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22517893 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaatgctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaatagaa |
22517992 |
T |
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| Q |
530 |
aattgtgggagaaacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggt |
629 |
Q |
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|||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| | |||||||| |
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| T |
22517993 |
aattgtgggaaaaacgaaagcggtatcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaacacttggaagtggt |
22518092 |
T |
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| Q |
630 |
taggtgagagtgattgaaattttacctca |
658 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
22518093 |
tagatgagagtgattgaaattttacctca |
22518121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 542 - 852
Target Start/End: Original strand, 13885153 - 13885463
Alignment:
| Q |
542 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtg |
641 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtgaaagta |
13885252 |
T |
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| Q |
642 |
attgaaattttacctcacccaattgttgttctaaatagacattcgttcctattggaagagtgttggcaatctcttgataggtgaatttgaagtttgacca |
741 |
Q |
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|||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
13885253 |
attgaaattttacctcacccaattgttgttttgaatagaaagtcgttcctattggaagagtgttggcaatctcttgacgggtgaatctgaagtttgacct |
13885352 |
T |
|
| Q |
742 |
cggcgtttgttgtttacaaatgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctggtatcagagatcgttgggaatcacct |
841 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
13885353 |
cggcgtttgttgtttacaactgaaagattcctcagaatcttcaacaatttcattatcttctacatgttttgctgggatccgagattgttgggaatcaccc |
13885452 |
T |
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| Q |
842 |
tgtgaattttc |
852 |
Q |
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||||||||||| |
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| T |
13885453 |
tgtgaattttc |
13885463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 91 - 296
Target Start/End: Original strand, 9710354 - 9710559
Alignment:
| Q |
91 |
ctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatg |
190 |
Q |
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||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9710354 |
ctgctgctttaattgcaaaactgggatgaagaagggacatgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatg |
9710453 |
T |
|
| Q |
191 |
tttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgt |
290 |
Q |
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||||||||||||| |||||||| |||| ||| |||| |||| ||||||| ||||||||||||| |||||| ||||||| | |||| ||||| ||| | | |
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| T |
9710454 |
tttgaaaatccagtgaagttggcagaactcaggttaagcccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactat |
9710553 |
T |
|
| Q |
291 |
aatact |
296 |
Q |
| |
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|||||| |
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| T |
9710554 |
aatact |
9710559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 9709970 - 9710040
Alignment:
| Q |
24 |
gaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcaattttactctgc |
94 |
Q |
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||||||| |||||||||||||||||| ||||||| || |||||||||||||| |||||| ||| ||||||| |
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| T |
9709970 |
gaagagacttgatgtcaaaatataattctgtcaatggtacaccacttaaagattgatcattttcactctgc |
9710040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 570 - 656
Target Start/End: Complemental strand, 33457255 - 33457169
Alignment:
| Q |
570 |
cgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtgagagtgattgaaattttacct |
656 |
Q |
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|||||||||||| | |||| || ||||| |||| ||||| || | |||||||||| |||||| |||||||||| ||||||||||| |
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| T |
33457255 |
cgaaacatttgacagagtccaaccttaaaggaattgattatgaagacacattgaatgtgttaggcgagagtgattaaaattttacct |
33457169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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