View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_40 (Length: 253)
Name: NF2210_low_40
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 34415563 - 34415409
Alignment:
| Q |
1 |
taaacaaaatggaaaacactttcgacaccaagagaatgaggacaaaataaaataaaagaattggcttcctctcaaaataaattaaaatacctgacaactt |
100 |
Q |
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| T |
34415563 |
taaacaaaatggaaaacacattagacaccaagagaatgaggacaaaataaaacaaaagaattggcttcctctcaaaataaattaaaatacctgacaaatt |
34415464 |
T |
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| Q |
101 |
gtacctaataagacaaaaggcagcaccttatcattatttcaacaggtgcttgcca |
155 |
Q |
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| T |
34415463 |
gtacctaataagacaaaaggcagcaccttatcattatttcaacaggagcttgcca |
34415409 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 15277734 - 15277820
Alignment:
| Q |
156 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctct |
242 |
Q |
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| T |
15277734 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtctct |
15277820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 18153346 - 18153432
Alignment:
| Q |
156 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctct |
242 |
Q |
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| T |
18153346 |
tatctatagcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcacaacgacaaaccaatccttttgtctct |
18153432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 12415336 - 12415422
Alignment:
| Q |
156 |
tatctatatcattggattgaagatcacccaaatcatatacatctctaaccttagcgtgcataacgacaaaccaatccttttgtctct |
242 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||| |
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| T |
12415336 |
tatctataacattggattgaagatcacccaaatcatatacatctctaaccttagcgtgaacaaagacaaaccaatcattttgtctct |
12415422 |
T |
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