View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_41 (Length: 250)
Name: NF2210_low_41
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44817254 - 44817485
Alignment:
| Q |
1 |
catcttcaagaccattaggtgatgctgttttggatggaatcgattttgatattgaagatagtgatggtgaatattgggatgaacttgcaaaagtacttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||||||||||||||| |||||| |
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| T |
44817254 |
catcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtcaatattgggatgaacttgcaaaagcacttga |
44817353 |
T |
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| Q |
101 |
tgggtttagttcacagaagaaagtttatttgtgtgcaacaccacaatgtccttaccctgatgattatttggattcaactattaatactggtttatttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| |
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| T |
44817354 |
tgggtttagttcacagaagaaagtttatttgtctgcagcaccacaatgtccttaccctgatgctcatttggattcagctattaagactggtttatttgat |
44817453 |
T |
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| Q |
201 |
tatttttgggttcagttttataataatcctca |
232 |
Q |
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||| | |||||||||||||||||||||||||| |
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| T |
44817454 |
tatgtgtgggttcagttttataataatcctca |
44817485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44834611 - 44834839
Alignment:
| Q |
1 |
catcttcaagaccattaggtgatgctgttttggatggaatcgattttgatattgaagatagtgatggtgaatattgggatgaacttgcaaaagtacttga |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||| ||||| | | ||||| ||||||| || |||| | |
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| T |
44834611 |
catcttcaagacctttaggtgatgctgttttggatggaattgattttgatattgaagctggtg---gtgaacactatgatgaccttgcaagagcacttaa |
44834707 |
T |
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| Q |
101 |
tgggtttagttcacagaagaaagtttatttgtgtgcaacaccacaatgtccttaccctgatgattatttggattcaactattaatactggtttatttgat |
200 |
Q |
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| T |
44834708 |
tggttttagctcacaaaggagagtttacttgtctgcagcacctcaatgtcctttccctgatgctcatttggattcggctattaataccggtttatttgat |
44834807 |
T |
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| Q |
201 |
tatttttgggttcagttttataataatcctca |
232 |
Q |
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| T |
44834808 |
tatgtgtgggttcagttttataataatcctca |
44834839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44838087 - 44838142
Alignment:
| Q |
1 |
catcttcaagaccattaggtgatgctgttttggatggaatcgattttgatattgaa |
56 |
Q |
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| T |
44838087 |
catcttcaagaccattaggtgatgctgttttagatggaatagattttgatattgaa |
44838142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17571050 - 17570951
Alignment:
| Q |
1 |
catcttcaagaccattaggtgatgctgttttggatggaatcgattttgatattgaagatagtgatggtgaatattgggatgaacttgcaaaagtacttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||| |
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| T |
17571050 |
catcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtgaacattgggatgaacttgcaaaagcacttga |
17570951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 29617421 - 29617305
Alignment:
| Q |
120 |
aaagtttatttgtgtgcaacaccacaatgtccttaccctgatgattatttggattcaactattaatactggtttatttgattatttttgggttcagtttt |
219 |
Q |
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||||| ||||||| |||| |||||||||| |||||||| ||| ||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
29617421 |
aaagtctatttgtctgcagcaccacaatgcccttacccaaatgcttatttgaattcagctattaatactgatttatttgattatgtttgggttcagtttt |
29617322 |
T |
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| Q |
220 |
ataataatcctcaatgt |
236 |
Q |
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||||||||||||||||| |
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| T |
29617321 |
ataataatcctcaatgt |
29617305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 236
Target Start/End: Complemental strand, 23396487 - 23396371
Alignment:
| Q |
120 |
aaagtttatttgtgtgcaacaccacaatgtccttaccctgatgattatttggattcaactattaatactggtttatttgattatttttgggttcagtttt |
219 |
Q |
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||||||||||| | |||| | ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||| |||||| ||| |||||| |||| |
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| T |
23396487 |
aaagtttatttatttgcagcgccacaatgtccttactcttatgcttatttggattcagctattaatactggtttattagattatgtttaggttcattttt |
23396388 |
T |
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| Q |
220 |
ataataatcctcaatgt |
236 |
Q |
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||||||||||||||||| |
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| T |
23396387 |
ataataatcctcaatgt |
23396371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 23396543 - 23396494
Alignment:
| Q |
44 |
ttttgatattgaagatagtgatggtgaatattgggatgaacttgcaaaag |
93 |
Q |
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| T |
23396543 |
ttttgatattgaagttggtgatggtcaatattgggatgaacttgcaaaag |
23396494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 48222567 - 48222502
Alignment:
| Q |
6 |
tcaagaccattaggtgatgctgttttggatggaatcgattttgatattgaagatagtgatggtgaa |
71 |
Q |
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| T |
48222567 |
tcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggtggtggtgaa |
48222502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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