View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2210_low_47 (Length: 236)
Name: NF2210_low_47
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_47 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 4666051 - 4665921
Alignment:
| Q |
91 |
taacatttgttacggaacttttgactactattgtgttttgaaagtaacttttcttatttcaaccatctgttaaagatgaaccgtatctactgtgcatttg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4666051 |
taacatttgttacggaacttttgactactattttgttttgaaagtaacttttcttatttcaaccatctgttaaagatgaactgtatctactgtgcatttg |
4665952 |
T |
|
| Q |
191 |
aagacaatgctacgattggcaaccaagaaaa |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4665951 |
aagacaatgctacgattggcaaccaagaaaa |
4665921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 4669581 - 4669423
Alignment:
| Q |
8 |
ttcttatcatc-tttaagcaatatgtcatagttttcaaaatgcattccacaaataacaaattcagatggtatatttccaagatttaacatttgttacgga |
106 |
Q |
| |
|
||||||||||| |||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4669581 |
ttcttatcatcctttaagcaatgtg--atagttttcaaaatgcattccaaaaataacaagttcagatggtatatttccaagatttaacatttgttgtgga |
4669484 |
T |
|
| Q |
107 |
actttt---gactactattgtgttttgaaagtaacttttcttatttcaaccatctgttaaa |
164 |
Q |
| |
|
| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
4669483 |
attttttactactactattgtgtttttaaagtaactttttttatttcaaccatctgctaaa |
4669423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4666110 - 4666047
Alignment:
| Q |
1 |
attttcattcttatcatctttaagcaatatgtcatagttttcaaaatgcattccacaaataaca |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
4666110 |
attttcattcttatcatctttaagcaatatgtcatagttttcaaaatgcagtccataaataaca |
4666047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University