View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_5 (Length: 732)
Name: NF2210_low_5
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Complemental strand, 27219065 - 27218598
Alignment:
| Q |
14 |
gcacagacgattataaatagattgtggtctagactttaaactagagagaatattgtttttgaacacatttttgatagctttgttggtttaaataatggat |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27219065 |
gcacagacgattataaatagattgtggtctagactttaaactagagagaatattgtttttgaacacatttttgctagctttgttggtttaaataatggat |
27218966 |
T |
|
| Q |
114 |
taacaaatgttttcactacatctttgatcagtcttcgtataatctacatttgtaacaagcatggtgtatatcttcttacggagtgttaaaaatgtagctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27218965 |
taacaaatgttttcactacatctttgatcagtcttcgtataatctacatttgtaacaagcatggtgtatatcttctcacggagtgttaaaaatgtagctt |
27218866 |
T |
|
| Q |
214 |
tattcacaccctaagaataattcacaatagcttggtgtatgccttcatataacactatgccgcaatctcttcagctgaacattgtatattcatct----- |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27218865 |
tattcacaccctaagaataattcacaatagcttggtgtatgccttcatataacactatgccacaatctcttcagctgaacattgtatattcatctgcaaa |
27218766 |
T |
|
| Q |
309 |
--------gcaagttgttgattaaccttgtgtaattgactttatattacaatctcttcagctgagcatcatattttcatctgcaaactgttgaatttagg |
400 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218765 |
ttgcttctgcaagttgttgattaaccttgtgtaattgactttaaattacaatctcttcagctgagcatcatattttcatctgcaaactgttgaatttagg |
27218666 |
T |
|
| Q |
401 |
tcattttgaatgttaaaatattgaaccctcttttaattgacatggtgtttctattatctataatatca |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218665 |
tcattttgaatgttaaaatattgaaccctcttttaattgacatggtgtttctattatctataatatca |
27218598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 462 - 732
Target Start/End: Complemental strand, 27218457 - 27218187
Alignment:
| Q |
462 |
aatatcagaacacaagaagaaaattggcctttggggaataacactaccttcagcagatgcaaccgttattggaaaagtattatttattctaacagaacac |
561 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||| ||||| |
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| T |
27218457 |
aatattagaacacaagaagaaaattggcctttggggaataacactaccttcagcaaatgcaaccgttgttggaaaagtatttttgattctaacaaaacac |
27218358 |
T |
|
| Q |
562 |
gccaatggtctctccggattaaatgagaaccccgagacaattcaaaaagggaaagttttttggtcacctgtgaagccggtacattttggtctgaagctaa |
661 |
Q |
| |
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|| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218357 |
gctaatggtctccccggattaaatgataaccccgagacaattcaaaaagggaaagttttttggtcacctgtgaagccggtacattttggtctgaagctaa |
27218258 |
T |
|
| Q |
662 |
gttcaaaatctttgttgggcatttcaggattacatttggaataatcctaggtattttaggaagaatggcct |
732 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218257 |
gttcaaaatctttgttgggcatttcaggattacatttggaataatcctaggtattttaggaagaatggcct |
27218187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 328 - 468
Target Start/End: Complemental strand, 27211769 - 27211630
Alignment:
| Q |
328 |
tgtgtaattgactttatattacaatctcttcagctgagcatcatattttcatctgcaaactgttgaatttaggtcattttgaatgttaaaatattgaacc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
27211769 |
tgtgtaattgactttatattacaatctcttcagctgaacatcgtattttcatctgcaagctgttgaatttaggtcattttgaatgttaaaatattgaatc |
27211670 |
T |
|
| Q |
428 |
ctcttttaattgacatggtgtttctattatctataatatca |
468 |
Q |
| |
|
||| ||||||||||||||||| ||| |||| |||||||||| |
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|
| T |
27211669 |
ctc-tttaattgacatggtgtatctgttatttataatatca |
27211630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 48 - 243
Target Start/End: Complemental strand, 27216634 - 27216439
Alignment:
| Q |
48 |
tttaaactagagagaatattgtttttgaacacatttttgatagctttgttggtttaaataatggattaacaaatgttttcactacatctttgatcagtct |
147 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| || || |||||| |||||| | ||||||| || ||||| |
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|
| T |
27216634 |
tttagactagagagaatattgtttttggacacatttttgctagctttgttagttcaaatgattagtttacaaatattttcattgcatcttttattagtct |
27216535 |
T |
|
| Q |
148 |
tcgtataatctacatttgtaacaagcatggtgtatatcttcttacggagtgttaaaaatgtagctttattcacaccctaagaataattcacaatag |
243 |
Q |
| |
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|| ||||| |||||||||||| |||| |||||||||||||||||| ||| ||||||||| ||||| | |||||||||||||||| ||||| |||| |
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|
| T |
27216534 |
tcatataagctacatttgtaaaaagcttggtgtatatcttcttacagagggttaaaaatatagctatcgtcacaccctaagaatagttcacgatag |
27216439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 549 - 690
Target Start/End: Complemental strand, 27202551 - 27202410
Alignment:
| Q |
549 |
tctaacagaacacgccaatggtctctccggattaaatgagaaccccgagacaattcaaaaagggaaagttttttggtcacctgtgaagccggtacatttt |
648 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||| || ||||| ||| | ||| |||||||| ||||||||||| |||||||||| ||| | || ||| || |
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|
| T |
27202551 |
tctaacagaacatgccaatggtctccctggattgaacgagaatcccaaaacagttcaaaaaaggaaagtttttgggtcacctgtaaaggctgtgcatatt |
27202452 |
T |
|
| Q |
649 |
ggtctgaagctaagttcaaaatctttgttgggcatttcagga |
690 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||| |||| |||| |
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| T |
27202451 |
ggtctgaagctaggctcaaattctttgttgggtattttagga |
27202410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 27211989 - 27211912
Alignment:
| Q |
166 |
taacaagcatggtgtatatcttcttacggagtgttaaaaatgtagctttattcacaccctaagaataattcacaatag |
243 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
27211989 |
taacaagcttggtgtatatcttcttacgaactgttaaaaatgtagctatattcacaccctaagaataattcacgatag |
27211912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 537
Target Start/End: Complemental strand, 27211467 - 27211406
Alignment:
| Q |
476 |
agaagaaaattggcctttggggaataacactaccttcagcagatgcaaccgttattggaaaa |
537 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
27211467 |
agaagaaaattggcctttggagaataacactaccttcagcagatgcaactgttgttggaaaa |
27211406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 27211884 - 27211847
Alignment:
| Q |
275 |
gcaatctcttcagctgaacattgtatattcatctgcaa |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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|
| T |
27211884 |
gcaatctcttcagctgaacattgtatattcatctgcaa |
27211847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 522
Target Start/End: Complemental strand, 24091521 - 24091473
Alignment:
| Q |
474 |
caagaagaaaattggcctttggggaataacactaccttcagcagatgca |
522 |
Q |
| |
|
||||||||||||||| || || ||| ||||||||||||||||||||||| |
|
|
| T |
24091521 |
caagaagaaaattggactatgtggagtaacactaccttcagcagatgca |
24091473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 27211748 - 27211704
Alignment:
| Q |
276 |
caatctcttcagctgaacattgtatattcatctgcaagttgttga |
320 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |||||| |
|
|
| T |
27211748 |
caatctcttcagctgaacatcgtattttcatctgcaagctgttga |
27211704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 476 - 677
Target Start/End: Complemental strand, 37579359 - 37579158
Alignment:
| Q |
476 |
agaagaaaattggcctttggggaataacactaccttcagcagatgcaaccgttattggaaaagtattatttattctaacagaacacgccaatggtctctc |
575 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||| || | | |||||| | |
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|
| T |
37579359 |
agaagaaaattggtctttggggaataacactaccttcagcagatgcaaccgttgttggaaaaacattttcggttctaacagaaaaccctgaaggtctccc |
37579260 |
T |
|
| Q |
576 |
cggattaaatgagaaccccgagacaattcaaaaagggaaagttttttggtcacctgtgaagccggtacattttggtctgaagctaagttcaaaatctttg |
675 |
Q |
| |
|
||||| ||||||| ||| |||| || | || ||||||| ||||||||| |||||| |||||||||||||||| ||||| || | ||||||||| || |
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|
| T |
37579259 |
aggattgaatgagagtcccaagactgttgagaagaggaaagtcttttggtcatctgtgaggccggtacattttggtgtgaagataggctcaaaatctctg |
37579160 |
T |
|
| Q |
676 |
tt |
677 |
Q |
| |
|
|| |
|
|
| T |
37579159 |
tt |
37579158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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