View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_6 (Length: 729)
Name: NF2210_low_6
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 394 - 622
Target Start/End: Complemental strand, 8170003 - 8169775
Alignment:
| Q |
394 |
aaaaacgttctccctctacaatcttcttggctgaaacccatcagatatgtcatcgatccaacttctaaatgaaaacaagtatgattttccacttctccga |
493 |
Q |
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| T |
8170003 |
aaaaaagttctccctctacaatcttcttggctgaaacccatcagatatgtcaccgatccaacttctaactgaaaacaagtatgattttccacttctccga |
8169904 |
T |
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| Q |
494 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcaattgaaaatattccaatcg |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8169903 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcagttgaaaatattccaatcg |
8169804 |
T |
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| Q |
594 |
accaatcctgttctgttgatgtcattttg |
622 |
Q |
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| T |
8169803 |
accaatcatgttctgttgatgtcattttg |
8169775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 8172842 - 8172670
Alignment:
| Q |
19 |
tctttgatgcaaatcttttgagataaactcaagacactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagc |
118 |
Q |
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| T |
8172842 |
tctttgatgcaaatcttttgagataaactca-gacactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcggc |
8172744 |
T |
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| Q |
119 |
cattgcaaaacataataataggattgcagccaccacgctttgttgtgttaccttgctatgctgatatatatata |
192 |
Q |
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| T |
8172743 |
cattgcaaaagataataatatgattgcagccaccacgctttgttatgttaccttgctatgctgatatatatata |
8172670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 7591158 - 7591014
Alignment:
| Q |
19 |
tctttgatgcaaatcttttgagataaactcaagacactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagc |
118 |
Q |
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||||||||||||||| || ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7591158 |
tctttgatgcaaatcattagagattaattcac-acactagagatgcatcatcttgattcacaccatagttcttgttcagcacgttattttgtttttcagc |
7591060 |
T |
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| Q |
119 |
cattgcaaaacataataataggattgcagccaccacgctttgttgtgtt |
167 |
Q |
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| T |
7591059 |
cattgctaaa---gataataggattgaagccaccacgctttgttgtgtt |
7591014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 8167941 - 8167885
Alignment:
| Q |
663 |
taagttttaccattaaaatataataacaaatatctcttatgttgtacatagcctatg |
719 |
Q |
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| T |
8167941 |
taagttttaccattaaaatataataacaaatatctcttatgttgtacatagcctatg |
8167885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 621 - 672
Target Start/End: Complemental strand, 8169709 - 8169658
Alignment:
| Q |
621 |
tgcagcttgctttggttaaagtgaagttatactcaccttagataagttttac |
672 |
Q |
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| T |
8169709 |
tgcagcttgctttggttaaagtgaagttatactcaccttagataagttttac |
8169658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 8172544 - 8172461
Alignment:
| Q |
311 |
aaaaactaatatattaata-cttttctaggttctaaaacctacaacnnnnnnnnnnttgtacatagaaatattgacgggaatataaa |
396 |
Q |
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| T |
8172544 |
aaaaactaatatattaataacttttctaggttctaaaacctacaa---aaaaaaaattgtacatagaaatattgacgggaatataaa |
8172461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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