View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_7 (Length: 601)
Name: NF2210_low_7
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 42 - 547
Target Start/End: Original strand, 13885466 - 13885959
Alignment:
| Q |
42 |
tgccgaacagtattgaatcagtgagaattggtggcgaaacagaagatggttgagaaacttcgacaatgtcgcgaacttcctcttcatgttcctccgatag |
141 |
Q |
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|||||| ||||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
13885466 |
tgccgagcagtattgattcaatgagaattgccgttgaaacagaagatggttgagaaacttcgacaatgtcgtgaacttcctcttcacattcctccgatag |
13885565 |
T |
|
| Q |
142 |
tgggacttatgtgttgttggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatga |
241 |
Q |
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| T |
13885566 |
tgagactt------------caggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctacga |
13885653 |
T |
|
| Q |
242 |
atatcagaattaatatatggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatg |
341 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
13885654 |
atatcagaattaatatatggagaacttggggctgaattgtctgttatgccataaatgctagagagggatgttgtcgatgaataaaagtcagatttatatg |
13885753 |
T |
|
| Q |
342 |
tgaagccatcagaaaaacacggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacctgagtaaattgagaggtgtcatctgagtttttatt |
441 |
Q |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13885754 |
tcaagccatcagaaaaacacggttctgaaagtgaaaaagcaggacttgcacatacgctacgaacctgagtaaattgagaggtgtcatctgagtttttatt |
13885853 |
T |
|
| Q |
442 |
attctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcatcgataattcgattttttccctcatgaaccctaattcgttca |
541 |
Q |
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| T |
13885854 |
attctcgttgattttagttacaacagcaacttctttcatctttgaaaaactcgaatcattgataattcgattatttccctcatgaaccctaattggttca |
13885953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 1220153 - 1220198
Alignment:
| Q |
504 |
taattcgattttttccctcatgaaccctaattcgttcacatctcct |
549 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||| ||||||||||||| |
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| T |
1220153 |
taattcgattgtttccgtcatgaaacctaattggttcacatctcct |
1220198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 160 - 407
Target Start/End: Complemental strand, 29092162 - 29091915
Alignment:
| Q |
160 |
ggcaggtggtatgttagacctatttgatgacaattccttcttgtactctttttcaaaacgagatgttttgatattgctatgaatatcagaattaatatat |
259 |
Q |
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|||||| || ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
29092162 |
ggcaggaggcatgatagatctatttgatgacaattccttcttgtactctttttcgaaacgagatgttttgatattgctatgaatatctggattaatatat |
29092063 |
T |
|
| Q |
260 |
ggagagcttggtgttgaattgtcagttatgccataaatgctagaaagggatgttgccgatgaataaaagtcagatttatatgtgaagccatcagaaaaac |
359 |
Q |
| |
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||||| ||||| ||||||||| || ||||||| |||||| || ||||| | | ||||||||||| ||||||||||||| ||||| |||||||||| |
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| T |
29092062 |
ggagaacttgggactgaattgtctgtcatgccatgaatgctggagagggacgacactgatgaataaaattcagatttatatgacaagccgtcagaaaaac |
29091963 |
T |
|
| Q |
360 |
acggttctaaaagtgaaaaagcaggacttgcacatacgctatgaacct |
407 |
Q |
| |
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|| ||||| ||||||| |||| |||||||||||| |||||||| |||| |
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| T |
29091962 |
accgttctgaaagtgacaaagtaggacttgcacacacgctatgtacct |
29091915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 547
Target Start/End: Complemental strand, 31913691 - 31913648
Alignment:
| Q |
504 |
taattcgattttttccctcatgaaccctaattcgttcacatctc |
547 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
31913691 |
taattcgattgtttccatcatgaaccctaattggttcacatctc |
31913648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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