View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2210_low_8 (Length: 576)
Name: NF2210_low_8
Description: NF2210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2210_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 1e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 105 - 357
Target Start/End: Original strand, 25784268 - 25784520
Alignment:
| Q |
105 |
aataaaaccgttcttaacactgaattggttaggcctaccggatggtccagtttcaattcaagaaaagtttgaatacatcatgtatc----gatgaaggtt |
200 |
Q |
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| T |
25784268 |
aataaaaccgttcttaacactgaattggttgggcctaccggatggtccagtttcaattcaagaaaagtttgaatacatcatgtatgtatggatgaaggtt |
25784367 |
T |
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| Q |
201 |
acatgacatcacagccaatagactttcacgttgtccacctaaagtgtatgtaaatgtctctcatgttatattgttgtatctgtatcaattcattttattt |
300 |
Q |
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| T |
25784368 |
acatgacatcacagccaatggactttcaccttgtccacctgaagtgtatgtaaacgtctctcatgttatattgttgtatctgtatcaattcattttattt |
25784467 |
T |
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| Q |
301 |
tcatcataaatatcacctagtaatgtatgatagagtatgctttggttgatccatata |
357 |
Q |
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| T |
25784468 |
tcatcagaaatatcatctag----gtatgatagaaaatgctttggttgatccatata |
25784520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 25784216 - 25784271
Alignment:
| Q |
10 |
attatactttatctattctaaaacaaattatttatctacataatccaactctaata |
65 |
Q |
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| T |
25784216 |
attatactttatctattccaaaacaaattatttatctacataatccaactctaata |
25784271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 121 - 312
Target Start/End: Original strand, 55683335 - 55683523
Alignment:
| Q |
121 |
acactgaattggttaggcctaccggatggtccagtttcaattcaagaaaagtttgaatacatcatgtatcgatgaaggttacatgacatcacagccaata |
220 |
Q |
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| T |
55683335 |
acactaaattggttttgcctccaggatggccctgtttcaattcaagaaaagtttgaatatattatgtatgga---aggttatatgacattaaagctgatg |
55683431 |
T |
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| Q |
221 |
gactttcacgttgtccacctaaagtgtatgtaaatgtctctcatgttatattgttgtatctgtatcaattcattttattttcatcataaata |
312 |
Q |
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| T |
55683432 |
gactttcacgttccccacctgaagtgtatgtaaatgtttcccatgttatattgttgtatttgtattacttcattttattttaatcagaaata |
55683523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 55681564 - 55681625
Alignment:
| Q |
39 |
atttatctacataatccaactctaatatatgc-tttattatccgcttgatcgtttgcggacc |
99 |
Q |
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| T |
55681564 |
atttatctacatagttcaaccctaatatatgcttttattatccacttgatcttttgcggacc |
55681625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 327
Target Start/End: Original strand, 34015376 - 34015579
Alignment:
| Q |
121 |
acactgaattggttaggcctaccggatggtccagtttcaattcaagaaaagtttgaatacatcatgtatcgatgaaggttacatgacatcacagccaata |
220 |
Q |
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| T |
34015376 |
acactaaattggttttgcctccaggatggccctgtttcaattcaagagaagttcgaatatatcatgtatggaaga---ttatatgacattaaagctgatg |
34015472 |
T |
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| Q |
221 |
gactttcacgttgtccacctaaagtgtatgtaaatgtctctcatgttatattgttgtatctgtatcaattcattttattttcatcataaatatcacctag |
320 |
Q |
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| T |
34015473 |
gactttcacgttccccacctgaagtgtatgtaaatgcttcccatgttatattgttgtatttgtattacttcattttattttaatcagaaatatcaccaag |
34015572 |
T |
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| Q |
321 |
taatgta |
327 |
Q |
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|||||| |
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| T |
34015573 |
gaatgta |
34015579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 34010489 - 34010408
Alignment:
| Q |
39 |
atttatctacataatccaactctaatatatgc-tttattatccgcttgatcgtttgcggacctatccaataaaaccgttctt |
119 |
Q |
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| T |
34010489 |
atttatctacagagttcaaccctaatatatgcttttattatccacttgatcttttgcggacccattccataaaaccattctt |
34010408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 34014361 - 34014442
Alignment:
| Q |
39 |
atttatctacataatccaactctaatatatgc-tttattatccgcttgatcgtttgcggacctatccaataaaaccgttctt |
119 |
Q |
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| T |
34014361 |
atttatctacagagttcaaccctaatatatgcttttattatccacttgatcttttgcggacccattccataaaaccattctt |
34014442 |
T |
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