View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_11 (Length: 397)
Name: NF2211_high_11
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 1816667 - 1817040
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagtggttcgactctcccctgtgccaatttgggnnnnnnntgaacgtaaaatacaattaggcatgct |
117 |
Q |
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| T |
1816667 |
tttggtttctataaatatacccacttttaattttagtggttcgactctcccctgtgccaatttgggaaaaaaatgaaggtaaaatacaattaggcatgct |
1816766 |
T |
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| Q |
118 |
tagttgcttaccaaggacagtaggaagtactattcgagttgcatttagattaactttctggcaccctccttcctttgttccatttccggtttgccccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1816767 |
tagttgcttaccaaggacagtaggaagtactattcgagttgcatttagatgaactttctggcaccctccttcctttgttccatttccggtttgccccttg |
1816866 |
T |
|
| Q |
218 |
ggacaaaaacaagtgtgactccccaaagtgttattacaatttgctttatttttgcatacatgagtttttgttgcacattcgtcaatgtctgaaaaaccat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1816867 |
ggacaaaaacaagtgtgactccccaaagtgttattacaatttgctttatttttgcatacatgagtttttgttgcacattcgtcaatgtctgaaaaaccat |
1816966 |
T |
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| Q |
318 |
aaaaccatggtcattagtatcttac----tactatacatgtgatttgatacaaaaatgaaattcaatatctctg |
387 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1816967 |
aaaaccatggtcattagtatcttactacttactatacatgtgatttgatacaaaaatgaaattcaatatctctg |
1817040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 1842310 - 1842176
Alignment:
| Q |
174 |
tctggcaccctccttcctttgttccatttccggtttgccccttgggacaaaaacaagtgtgactccccaaagtgttattacaatttgctttatttttgca |
273 |
Q |
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| T |
1842310 |
tctggcaccctctttcctttgttccatctccagattgcccccggggacagaaacatgtgtaatttccaatggtgtttttacaatttgctttagttttgca |
1842211 |
T |
|
| Q |
274 |
tacatgagtttttgttgcacattcgtcaatgtctg |
308 |
Q |
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|||| | ||| || ||||||||||| |||||| |
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| T |
1842210 |
accatgtttgtttttttcacattcgtcagtgtctg |
1842176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 9117762 - 9117716
Alignment:
| Q |
179 |
caccctccttcctttgttccatttccggtttgccccttgggacaaaa |
225 |
Q |
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| T |
9117762 |
caccctccttcccttgttccattgccggattgccccttcggacaaaa |
9117716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 21248902 - 21248938
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||| |
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| T |
21248902 |
tttggttcctataaatataccaacttttcattttagt |
21248938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 34873013 - 34872977
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |
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|
| T |
34873013 |
tttggttcctataaatataccaacttttcattttagt |
34872977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 44060981 - 44060945
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||| |
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|
| T |
44060981 |
tttggttcctataaatataccaacttttcattttagt |
44060945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 16078715 - 16078679
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |
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|
| T |
16078715 |
tttggttcctataaatataccaacttttcattttagt |
16078679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32800811 - 32800847
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |
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| T |
32800811 |
tttggttcctataaatataccaacttttcattttagt |
32800847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 34661486 - 34661522
Alignment:
| Q |
18 |
tttggttcctataaatatacccacttttaattttagt |
54 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |
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| T |
34661486 |
tttggttcctataaatataccaacttttcattttagt |
34661522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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