View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_high_12 (Length: 388)

Name: NF2211_high_12
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_high_12
NF2211_high_12
[»] chr7 (12 HSPs)
chr7 (15-370)||(31054463-31054818)
chr7 (134-370)||(31113372-31113608)
chr7 (135-295)||(31149814-31149980)
chr7 (135-295)||(31168106-31168272)
chr7 (137-281)||(31066129-31066273)
chr7 (143-223)||(31197139-31197219)
chr7 (333-370)||(31150027-31150064)
chr7 (333-370)||(31168319-31168356)
chr7 (15-55)||(31066032-31066072)
chr7 (15-55)||(31113247-31113287)
chr7 (15-47)||(31149424-31149456)
chr7 (15-47)||(31167716-31167748)
[»] chr3 (1 HSPs)
chr3 (143-223)||(24265580-24265660)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 31054463 - 31054818
Alignment:
Q  15 cacagacaccacctttggattttctgcatatgtgttgaaaacattttgttcatcaacattttggattaatgaggtttatcattttgttgaaaattaaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31054463 cacagacaccacctttggattttctgcatatgtgttgaaaacattttgttcatcaacattttggattaatgaggtttatcattttgttgaaaattaaatc 31054562  T
Q  115 actagatctaaaaaacatggtgtttctgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaata 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31054563 actagatctaaaaaacatggtgtttccgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaata 31054662  T
Q  215 aattattgcnnnnnnngcattctccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaagatcaagtaaaatattgtaa 314  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31054663 aattattgctttttttgcattctccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaagatcaagtaaaatattgtaa 31054762  T
Q  315 tggttaattttcttattgtatgtaccttcccatgattgaacccagtaaatcataat 370  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31054763 tggttcattttcttattgtatgtaccttcccatgattgaacccagtaaatcataat 31054818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 134 - 370
Target Start/End: Original strand, 31113372 - 31113608
Alignment:
Q  134 gtgtttctgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgcnnnnnnngca 233  Q
    ||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||       |||    
T  31113372 gtgttacttacttgcaatttgtgcagcttcttcctcttcaagcatagctgcaaagccattaatctgtttattatatgaataaattattgcttcttttgca 31113471  T
Q  234 ttctccttgctgtgaatgatcaatatatattagttaatcaatcaatttcttctaaagaaaagatcaagtaaaatattgtaatggttaattttcttattgt 333  Q
    |||||||||||||||||||||||||||||||||||||| |||   ||     |||| |||| || ||||  ||| ||||||||||||| |||||||||      
T  31113472 ttctccttgctgtgaatgatcaatatatattagttaataaatttgttctaaataaaaaaaaaattaagttgaattttgtaatggttaaatttcttatttc 31113571  T
Q  334 atgtaccttcccatgattgaacccagtaaatcataat 370  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31113572 atgtaccttcccaatattgaacccagtaaatcataat 31113608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 31149814 - 31149980
Alignment:
Q  135 tgtttctgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgcnnnnnnngcat 234  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       || |    
T  31149814 tgtttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcct 31149913  T
Q  235 tctccttgctgtgaatgatca------atatatattagttaatcaatcaatttcttctaaagaaaag 295  Q
     ||| | ||||||||||||||      ||||||||||||||||| ||||||||| |||| |||||||    
T  31149914 cctcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaag 31149980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 31168106 - 31168272
Alignment:
Q  135 tgtttctgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgcnnnnnnngcat 234  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       || |    
T  31168106 tgtttctgacttgcaagttgtgcagcttcttcctcttcaagtatagctgcaaagccattaatctgtttattatatgaataaattattgcctcttctgcct 31168205  T
Q  235 tctccttgctgtgaatgatca------atatatattagttaatcaatcaatttcttctaaagaaaag 295  Q
     ||| | ||||||||||||||      ||||||||||||||||| ||||||||| |||| |||||||    
T  31168206 cctcgtggctgtgaatgatcaatatatatatatattagttaatcgatcaatttcctctatagaaaag 31168272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 31066129 - 31066273
Alignment:
Q  137 tttctgacttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgcnnnnnnngcattc 236  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||       || | |    
T  31066129 tttctgacttgcaagttgtgcagcttcttcctcttcaagcatagctgcaaagccattgatctgtttattgtaagaataaattattgcttcttttgcctcc 31066228  T
Q  237 tccttgctgtgaatgatcaatatatattagttaatcaatcaattt 281  Q
    || || ||||||||||||| |||| | ||||||||||||||||||    
T  31066229 tctttactgtgaatgatcagtatacaatagttaatcaatcaattt 31066273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 31197219 - 31197139
Alignment:
Q  143 acttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgc 223  Q
    ||||||||| | |||||| ||||| |||||||||| ||| |||||||||||||| ||||| |||||||||||||| |||||    
T  31197219 acttgcaatatctgcagcttcttcatcttcaagtagagcagcaaagccattgatgtgtttgttatatgaataaatgattgc 31197139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 31150027 - 31150064
Alignment:
Q  333 tatgtaccttcccatgattgaacccagtaaatcataat 370  Q
    ||| |||||||||| |||||||||||||||||||||||    
T  31150027 tatataccttcccaagattgaacccagtaaatcataat 31150064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 31168319 - 31168356
Alignment:
Q  333 tatgtaccttcccatgattgaacccagtaaatcataat 370  Q
    ||| |||||||||| |||||||||||||||||||||||    
T  31168319 tatataccttcccaagattgaacccagtaaatcataat 31168356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 31066032 - 31066072
Alignment:
Q  15 cacagacaccacctttggattttctgcatatgtgttgaaaa 55  Q
    |||||||||||||||||| |||||||||||| | |||||||    
T  31066032 cacagacaccacctttgggttttctgcatatatattgaaaa 31066072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 31113247 - 31113287
Alignment:
Q  15 cacagacaccacctttggattttctgcatatgtgttgaaaa 55  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  31113247 cacagataccacctttggattttctgcatataggttgaaaa 31113287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 31149424 - 31149456
Alignment:
Q  15 cacagacaccacctttggattttctgcatatgt 47  Q
    |||||| ||||||||||||||||||||||||||    
T  31149424 cacagataccacctttggattttctgcatatgt 31149456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 31167716 - 31167748
Alignment:
Q  15 cacagacaccacctttggattttctgcatatgt 47  Q
    |||||| ||||||||||||||||||||||||||    
T  31167716 cacagataccacctttggattttctgcatatgt 31167748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 24265660 - 24265580
Alignment:
Q  143 acttgcaatttgtgcagcctcttcctcttcaagtatagctgcaaagccattgatctgtttattatatgaataaattattgc 223  Q
    ||||||||||| ||| || |||||  ||||||||| ||| ||||| |||||||| |||||||| ||||| |||| ||||||    
T  24265660 acttgcaatttttgctgcttcttctacttcaagtacagcagcaaaaccattgatgtgtttattgtatgagtaaaatattgc 24265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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