View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2211_high_15 (Length: 366)
Name: NF2211_high_15
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 12404178 - 12403837
Alignment:
| Q |
18 |
aaagtaaataaatttatgtaaaatgaccaaacattttgtgctttcaaagtctgtaaactgggcattttggtgctgctgcgtttagcagaatgtgttgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12404178 |
aaagtaaataaatttatgtaaaatgaccaaacattttgtgctttcaaagtctgtaaactgggcattttggtgctgctgcgtttagcagaatgtgttgaag |
12404079 |
T |
|
| Q |
118 |
gcaatgagatctgagttcactgacttttttgttcatatgggatctgattttctcatttcagtccttcaacactagggtctagcagatgttaaaaagcact |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12404078 |
gcaatgagatctgagttcaccgacttttttgttcatatgggatctgattttctcattgcagttcttcaacactagggcctagcagatgttaaaaagcact |
12403979 |
T |
|
| Q |
218 |
cagaattggtggctgtttattaaatgacttaaagtacatttaaatgacttagctgtttcttggagttacatttaaacaggaatgataaaatgaatgcagg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12403978 |
cagaattggtggctgtttattaaatgacttaaagtacatttaaatgacttagctgtttcttggaggtacatttaaacaggaatgataaaatgaatgcagg |
12403879 |
T |
|
| Q |
318 |
aagatttttgtgtgacttaataatttgagcctacctatgcta |
359 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12403878 |
aagatttttgtgtgatttaataatttgagcctacttatgcta |
12403837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 33645318 - 33645266
Alignment:
| Q |
176 |
cagtccttcaacactagggtctagcagatgttaaaaagcactcagaattggtg |
228 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
33645318 |
cagtccttcaacacttgggtctagcaaatgtggaaaggcactcagaattggtg |
33645266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University