View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_high_23 (Length: 299)

Name: NF2211_high_23
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_high_23
NF2211_high_23
[»] chr6 (1 HSPs)
chr6 (11-278)||(31273828-31274095)
[»] chr1 (5 HSPs)
chr1 (14-278)||(26215290-26215554)
chr1 (27-191)||(9802095-9802259)
chr1 (28-194)||(37737098-37737264)
chr1 (136-198)||(49639396-49639458)
chr1 (28-61)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (11-263)||(23373624-23373876)
chr3 (40-263)||(19428244-19428467)
chr3 (136-198)||(53979841-53979903)
[»] chr7 (4 HSPs)
chr7 (13-194)||(3005158-3005339)
chr7 (76-179)||(19813037-19813140)
chr7 (118-191)||(18477788-18477861)
chr7 (139-237)||(18480003-18480101)
[»] chr2 (3 HSPs)
chr2 (111-177)||(4939057-4939123)
chr2 (111-177)||(5024147-5024213)
chr2 (28-194)||(23682475-23682641)
[»] scaffold0164 (1 HSPs)
scaffold0164 (136-198)||(25469-25531)
[»] chr8 (3 HSPs)
chr8 (142-200)||(18550969-18551027)
chr8 (136-197)||(15194824-15194885)
chr8 (139-239)||(19873107-19873207)
[»] chr4 (1 HSPs)
chr4 (136-197)||(18255691-18255752)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 278
Target Start/End: Complemental strand, 31274095 - 31273828
Alignment:
Q  11 cagagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  31274095 cagagaaccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatg 31273996  T
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 210  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273995 atgaacttgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagc 31273896  T
Q  211 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcaga 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273895 cttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcaga 31273828  T

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Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 26215554 - 26215290
Alignment:
Q  14 agaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatg 113  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  26215554 agaaccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatg 26215455  T
Q  114 aacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagcctt 213  Q
    |||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  26215454 aacttgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaacaagcatt 26215355  T
Q  214 ctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagtttaacagaagggtcaga 278  Q
    ||||||| ||| | ||||||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  26215354 ctgtaaggagagacatctgtgtatggttgactggaatcatgatgaagttttatagaagggtcaga 26215290  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  27 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 126  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  127 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 191  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 37737098 - 37737264
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 127  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  128 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 194  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| ||||||||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaa 37737264  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 49639396 - 49639458
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 49639458  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaacctt 61  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

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Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 23373624 - 23373876
Alignment:
Q  11 cagagaaccccaaaa-tctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaat 109  Q
    ||||||||||||||| | ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||    
T  23373624 cagagaaccccaaaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaat 23373723  T
Q  110 gatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaag 209  Q
    | |||||||| |||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  23373724 ggtgaacttgggtaggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaactag 23373823  T
Q  210 ccttctgtaagcagatatatctgtgtatggtggactggaatcacgatgaagttt 263  Q
    ||||||||||||| | ||  | |||||| |||||||||||||| ||||||||||    
T  23373824 ccttctgtaagcaaagatgaccgtgtat-gtggactggaatcatgatgaagttt 23373876  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 263
Target Start/End: Complemental strand, 19428467 - 19428244
Alignment:
Q  40 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 139  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  140 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatgg 239  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||| || |||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaactaaccttctataagcagaaatgtctgtgtatgg 19428268  T
Q  240 tggactggaatcacgatgaagttt 263  Q
     |||||||||||| ||||||||||    
T  19428267 gggactggaatcatgatgaagttt 19428244  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 53979903 - 53979841
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 53979841  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 3005339 - 3005158
Alignment:
Q  13 gagaaccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgat 112  Q
    ||||| |||| || ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||    
T  3005339 gagaaacccagaagctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaat 3005240  T
Q  113 gaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 194  Q
    | | |||||| ||||| | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  3005239 gtatttgtgttggcttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 3005158  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  76 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 175  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  176 ttgt 179  Q
    ||||    
T  19813137 ttgt 19813140  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  118 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 191  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 18480003 - 18480101
Alignment:
Q  139 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtat 237  Q
    |||||||||||||||||||  || ||||| || ||||| ||||  || | |||||| || || |||||||| |||||||||||||  ||||||||||||    
T  18480003 tggctcaattgttgagtaatgaaggtaatgtctggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtat 18480101  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 4939057 - 4939123
Alignment:
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 177  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 4939123  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 5024147 - 5024213
Alignment:
Q  111 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 177  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 5024213  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 23682641 - 23682475
Alignment:
Q  28 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 127  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  128 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 194  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 23682475  T

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Target: scaffold0164 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 25469 - 25531
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaac 198  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  ||||||||||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaac 25531  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  142 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 197  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 19873207 - 19873107
Alignment:
Q  139 tggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaacaagccttctgtaagcagatatatctgtgtatg 238  Q
    |||||||||||||||||||  || ||||| |  ||||| ||||  || | |||||| || || |||||||| |||||||||||||  |||||||||||||    
T  19873207 tggctcaattgttgagtaatgaaggtaatgtatggtctagttgcattcaaatacaataatctcccaacaagtcttctgtaagcaggaatatctgtgtatg 19873108  T
Q  239 g 239  Q
    |    
T  19873107 g 19873107  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  136 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 197  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

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