View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_28 (Length: 290)
Name: NF2211_high_28
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 47233785 - 47234046
Alignment:
| Q |
15 |
tatactatgtggctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggnnnnnnngg |
114 |
Q |
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| T |
47233785 |
tatactatgtggctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggaaaaaaagg |
47233884 |
T |
|
| Q |
115 |
aaagaagagagttatt----tatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatc |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47233885 |
aaagaagagagttattaatttatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatc |
47233984 |
T |
|
| Q |
211 |
gttgcatttgggagtggagctagttcgaatcctatactctggattcatgcagtggctaggtg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47233985 |
gttgcatttgggagtggagctagttcgaatcctatactctggattcatgcagtggctaggtg |
47234046 |
T |
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