View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_high_3 (Length: 587)

Name: NF2211_high_3
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_high_3
NF2211_high_3
[»] chr5 (24 HSPs)
chr5 (112-359)||(25715493-25715736)
chr5 (424-558)||(25715304-25715429)
chr5 (221-300)||(2796524-2796605)
chr5 (221-300)||(2802685-2802766)
chr5 (208-300)||(22553658-22553754)
chr5 (221-300)||(12378783-12378864)
chr5 (223-300)||(39052857-39052936)
chr5 (241-300)||(14652759-14652818)
chr5 (208-300)||(31075306-31075403)
chr5 (221-300)||(26690109-26690190)
chr5 (221-300)||(26959841-26959922)
chr5 (209-300)||(40331168-40331264)
chr5 (221-300)||(7591180-7591261)
chr5 (245-299)||(18432391-18432445)
chr5 (221-308)||(25495383-25495472)
chr5 (245-300)||(2589304-2589359)
chr5 (246-309)||(34881048-34881110)
chr5 (208-282)||(32721092-32721171)
chr5 (208-300)||(38176166-38176262)
chr5 (208-300)||(38203390-38203486)
chr5 (208-283)||(42920724-42920803)
chr5 (256-300)||(27571796-27571840)
chr5 (244-300)||(35727273-35727329)
chr5 (221-300)||(36568016-36568096)
[»] chr2 (15 HSPs)
chr2 (208-300)||(22014261-22014356)
chr2 (227-300)||(1331294-1331369)
chr2 (210-299)||(17763048-17763141)
chr2 (208-300)||(13194203-13194301)
chr2 (209-299)||(31719767-31719860)
chr2 (245-300)||(30759360-30759415)
chr2 (221-300)||(41166455-41166536)
chr2 (241-300)||(44085788-44085849)
chr2 (208-301)||(5862343-5862441)
chr2 (224-287)||(28790824-28790889)
chr2 (241-297)||(30761322-30761378)
chr2 (253-300)||(11377395-11377442)
chr2 (255-300)||(11051145-11051190)
chr2 (210-300)||(27301180-27301274)
chr2 (245-309)||(44741808-44741871)
[»] chr4 (18 HSPs)
chr4 (208-300)||(32223000-32223094)
chr4 (208-300)||(48338644-48338740)
chr4 (208-298)||(18536346-18536440)
chr4 (208-300)||(46471727-46471823)
chr4 (218-300)||(35014575-35014659)
chr4 (208-300)||(5122067-5122163)
chr4 (208-300)||(14867067-14867163)
chr4 (221-300)||(36106172-36106253)
chr4 (231-309)||(48602221-48602300)
chr4 (221-299)||(7783890-7783969)
chr4 (221-301)||(21069356-21069438)
chr4 (208-302)||(27743499-27743598)
chr4 (230-300)||(25686171-25686242)
chr4 (208-302)||(41325694-41325792)
chr4 (256-299)||(11031369-11031412)
chr4 (224-300)||(49641133-49641211)
chr4 (208-287)||(41260422-41260505)
chr4 (221-302)||(4642745-4642828)
[»] chr1 (25 HSPs)
chr1 (208-300)||(36203135-36203231)
chr1 (221-298)||(17989347-17989426)
chr1 (208-301)||(34914431-34914525)
chr1 (211-300)||(35992286-35992379)
chr1 (246-300)||(32910098-32910152)
chr1 (241-298)||(11073093-11073150)
chr1 (208-301)||(6248373-6248470)
chr1 (253-300)||(25865749-25865796)
chr1 (211-300)||(35979963-35980056)
chr1 (221-300)||(52829109-52829190)
chr1 (208-279)||(9249776-9249851)
chr1 (219-300)||(10847226-10847309)
chr1 (208-309)||(19051414-19051518)
chr1 (208-301)||(25559705-25559802)
chr1 (208-301)||(26344734-26344831)
chr1 (112-154)||(18834149-18834191)
chr1 (221-300)||(44056034-44056115)
chr1 (208-241)||(6693789-6693822)
chr1 (263-300)||(9961930-9961967)
chr1 (213-300)||(17652046-17652137)
chr1 (263-300)||(29923055-29923092)
chr1 (224-298)||(36782076-36782152)
chr1 (245-302)||(50951765-50951822)
chr1 (208-300)||(8165230-8165325)
chr1 (221-299)||(41751521-41751601)
[»] scaffold0204 (2 HSPs)
scaffold0204 (208-300)||(26166-26262)
scaffold0204 (221-300)||(14825-14906)
[»] chr6 (13 HSPs)
chr6 (221-300)||(892044-892125)
chr6 (208-300)||(32190369-32190465)
chr6 (246-300)||(13532003-13532057)
chr6 (208-300)||(22414109-22414206)
chr6 (208-300)||(29048847-29048942)
chr6 (211-300)||(19134792-19134886)
chr6 (231-296)||(14564729-14564796)
chr6 (221-308)||(9686340-9686430)
chr6 (221-300)||(28633244-28633325)
chr6 (221-300)||(30752871-30752952)
chr6 (208-299)||(13092298-13092393)
chr6 (211-296)||(17306666-17306749)
chr6 (253-301)||(11417370-11417418)
[»] chr7 (18 HSPs)
chr7 (221-299)||(43202716-43202796)
chr7 (209-296)||(27456631-27456723)
chr7 (221-300)||(23032982-23033062)
chr7 (208-300)||(6879783-6879879)
chr7 (208-272)||(47646447-47646515)
chr7 (256-308)||(11834202-11834254)
chr7 (208-300)||(11399423-11399518)
chr7 (246-300)||(30079304-30079358)
chr7 (246-300)||(37375628-37375682)
chr7 (221-300)||(40849157-40849238)
chr7 (221-298)||(29628515-29628594)
chr7 (221-300)||(35495708-35495788)
chr7 (227-300)||(46147511-46147586)
chr7 (253-300)||(2734637-2734684)
chr7 (223-300)||(47483928-47484009)
chr7 (221-300)||(524569-524650)
chr7 (208-281)||(29211303-29211377)
chr7 (216-281)||(26214801-26214868)
[»] scaffold0664 (1 HSPs)
scaffold0664 (221-300)||(6282-6363)
[»] chr3 (17 HSPs)
chr3 (221-300)||(2832086-2832167)
chr3 (208-300)||(42362905-42362999)
chr3 (246-308)||(44651256-44651317)
chr3 (208-300)||(44662237-44662332)
chr3 (221-301)||(54122622-54122704)
chr3 (208-308)||(45629485-45629589)
chr3 (247-300)||(4669032-4669085)
chr3 (256-308)||(25918990-25919042)
chr3 (211-308)||(26758521-26758623)
chr3 (221-301)||(55467343-55467423)
chr3 (221-297)||(36330376-36330454)
chr3 (221-301)||(45914904-45914986)
chr3 (208-300)||(10481305-10481399)
chr3 (208-300)||(20846775-20846871)
chr3 (263-300)||(5640472-5640509)
chr3 (254-299)||(8355630-8355675)
chr3 (29-61)||(10481119-10481151)
[»] scaffold0001 (1 HSPs)
scaffold0001 (208-300)||(427946-428042)
[»] chr8 (12 HSPs)
chr8 (221-292)||(3129350-3129423)
chr8 (208-300)||(9012521-9012617)
chr8 (208-308)||(24681773-24681878)
chr8 (245-300)||(40436738-40436793)
chr8 (210-300)||(12073908-12073999)
chr8 (221-300)||(14185572-14185653)
chr8 (221-308)||(18755025-18755114)
chr8 (208-300)||(27674820-27674916)
chr8 (208-300)||(28441770-28441866)
chr8 (226-308)||(37162357-37162441)
chr8 (256-308)||(13325593-13325645)
chr8 (247-299)||(15452395-15452447)
[»] scaffold0210 (2 HSPs)
scaffold0210 (208-308)||(20318-20422)
scaffold0210 (208-308)||(28210-28314)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 112 - 359
Target Start/End: Complemental strand, 25715736 - 25715493
Alignment:
Q  112 caaccgaaccgaatcaaaccaaaccaaaacataagaaacacaccgtttaatggaaactagatcaatactcgtagaaactcaatgaannnnnnnnnnataa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||          ||||    
T  25715736 caaccgaaccgaatcaaaccaaaccaaaacataagaaacacactgtttaatggaaactagatcaatacttgtagaaattcaatgaattttttt---ataa 25715640  T
Q  212 aatgacatattttctcttgttaagtttcttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagttgt 311  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  25715639 aatgacatattttctcttgttaaggttcttttactttttatttaaaaaatgtatttatgtgctacttgaacttttagagaatgat-aaaatcttagttgt 25715541  T
Q  312 tgggtaaataaatattttatccaacattacaatttcatttaaaaaata 359  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25715540 tgaataaataaatattttatccaacattacaatttcatttaaaaaata 25715493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 424 - 558
Target Start/End: Complemental strand, 25715429 - 25715304
Alignment:
Q  424 gtaatcttataaaaaatattcttgataagaaacaacaccaattgaggcacacgagggagagccaaaaacattagctttaatggagccaacatggggagga 523  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  25715429 gtaatcttatcaaaaatattcttgataagaaacaacaccaattgagg---------gagagccaaaaacattagctttaatggagccaacatggggagga 25715339  T
Q  524 agccattgaacttcagtatagtctcaattctggca 558  Q
    |||||||||||||||||||||||||||||||||||    
T  25715338 agccattgaacttcagtatagtctcaattctggca 25715304  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 2796524 - 2796605
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||| ||||||  |||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||||    
T  2796524 ttttctcttgttaaatttcttctttactttttatttcaaaaatgtatttatgtgctacttgaaattttatagaattataaaa 2796605  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 2802685 - 2802766
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||| ||||||  |||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||||    
T  2802685 ttttctcttgttaaatttcttctttactttttatttcaaaaatgtatttatgtgctacttgaaattttatagaattataaaa 2802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 22553754 - 22553658
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||||||  |||||||||| ||  ||||||| |||||||| |||||||| ||||| ||||||||||||    
T  22553754 ataaaatgacatattttttctcttgttaagtttcttctttactttttatttctaaaatatttttatgtgttacttgaacttttagagaatgataaaa 22553658  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 12378783 - 12378864
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| ||||||||||||||  || ||||||| || |||||| |||||||||||||||| || ||||||||||||||||||    
T  12378783 ttttcttttgttaagtttcttctttgctttttatttcaaaaatgtatttatgtgctacttaaacttttaaagaatgataaaa 12378864  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 39052936 - 39052857
Alignment:
Q  223 ttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| ||||||  |||| ||||| || |||||||||||||||||||||||||| ||||| || |||||||||    
T  39052936 ttctcttgttaaatttcttctttacattttattttaaaaatatatttatgtgctacttgaacttttatagtatgataaaa 39052857  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 14652818 - 14652759
Alignment:
Q  241 tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||| |||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  14652818 tttactttttatttaaaaaacatatttttgtgttacttgaaattttagagaatgataaaa 14652759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 31075306 - 31075403
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaa-tatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||||||  ||||||||| |||  |||| | |||||||||| |||||||| ||||| ||||||||||||    
T  31075306 ataaaatgacatattttttctcttgttaagtttcttctttacttttttatttcaaaagtgtatttatgtgttacttgaacttttagagaatgataaaa 31075403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 26690190 - 26690109
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  ||| |||||| || |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  26690190 ttttctcttgttaagtttcttctttattttttatttcaaaaatatatttatatactacttcaaagtttatagaatgataaaa 26690109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 26959922 - 26959841
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  ||| |||||| || |||||||||||||| | |||||| ||| |||| ||||||||||||    
T  26959922 ttttctcttgttaagtttcttctttattttttatttcaaaaatatatttatatactacttcaaagtttatagaatgataaaa 26959841  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 40331168 - 40331264
Alignment:
Q  209 taaaatgacatatttt---ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||   ||| |||||||||||||  ||  |||||| |  |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  40331168 taaaatgacatatttttttctcctgttaagtttcttcattgttttttattgtaaaaatgtatttatgtgctacttgaacttttagagaatgataaaa 40331264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 7591180 - 7591261
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||| ||||||||| ||||||  |||||||||| || |||||| | ||||||||||||||||| ||||| | ||||||||||    
T  7591180 ttttttcttgttaaatttcttctttactttttatttcaaaaatgtctttatgtgctacttgaacttttagataatgataaaa 7591261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 18432445 - 18432391
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    ||||||| || ||||||||| |||||||||||||||| ||||| |||||||||||    
T  18432445 ctttttatttcaaaaatatagttatgtgctacttgaacttttagagaatgataaa 18432391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 25495472 - 25495383
Alignment:
Q  221 ttttctcttgttaagtttctttta--ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    ||||||||||||||||||||| ||  ||||||   | || ||||||||||||||||||||||| | ||| |||||||| ||||| |||||    
T  25495472 ttttctcttgttaagtttcttctaagctttttctatcaataatatatttatgtgctacttgaactcttagagaatgattaaaattttagt 25495383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 2589359 - 2589304
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||| || |||||| ||||||||||| | ||||| ||||||||||||||||||    
T  2589359 ctttttatttcaaaaatgtatttatgtgcaatttgaacttttaaagaatgataaaa 2589304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 34881048 - 34881110
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagtt 309  Q
    |||||| || |||| ||||||||||||| ||||||| ||||| |||||||| ||||||||||||    
T  34881048 tttttatttcaaaagtatatttatgtgccacttgaatttttagagaatgat-aaaatcttagtt 34881110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 32721092 - 32721171
Alignment:
Q  208 ataaaatgacatat--tttctcttgttaagttt---cttttactttttaattaaaaaatatatttatgtgctacttgaaa 282  Q
    ||||||||||||||  |||||||||||||||||   ||||   |||||| ||||||||| |||||||||||| |||||||    
T  32721092 ataaaatgacatatattttctcttgttaagtttattctttgcttttttatttaaaaaatgtatttatgtgctgcttgaaa 32721171  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 38176166 - 38176262
Alignment:
Q  208 ataaaatgacatattttctc--ttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| ||  ||||||| ||||||  || ||||| | ||||||||| ||||||  ||||| ||||||||||| |||| |||||||    
T  38176166 ataaaatgacatattttttcagttgttaaatttcttcttttcttttcatttaaaaaatgtatttaattgctatttgaaattttatagaaagataaaa 38176262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 38203390 - 38203486
Alignment:
Q  208 ataaaatgacatattttctc--ttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| ||  ||||||| ||||||  || ||||| | ||||||||| ||||||  ||||| ||||||||||| |||| |||||||    
T  38203390 ataaaatgacatattttttcagttgttaaatttcttcttttcttttcatttaaaaaatgtatttaattgctatttgaaattttatagaaagataaaa 38203486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 42920724 - 42920803
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaat 283  Q
    |||||||||||||||||  ||||||||||||||||  |||||||||||  | |||||| ||||||||  ||| |||||||    
T  42920724 ataaaatgacatattttttctcttgttaagtttcttctttactttttatatcaaaaatgtatttatgcactatttgaaat 42920803  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 27571796 - 27571840
Alignment:
Q  256 aaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| ||||||||||||||||||| ||||| ||||| ||||||    
T  27571796 aaaaatgtatttatgtgctacttgaacttttagagaataataaaa 27571840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 35727329 - 35727273
Alignment:
Q  244 actttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||| || |||||||| ||||| || |||||||| ||||| ||||||||||||    
T  35727329 actttttatttcaaaaatatgtttatatgttacttgaacttttagagaatgataaaa 35727273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 36568096 - 36568016
Alignment:
Q  221 ttttctcttgttaagtttctt-ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||| |||| ||  |||||  || |||||| ||||||||| ||||||||| | ||| ||||||||||||    
T  36568096 ttttctcttgttaagtgtcttcttgttttttctttcaaaaatgtatttatgtactacttgaactcttagagaatgataaaa 36568016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 22014356 - 22014261
Alignment:
Q  208 ataaaatgacatatttt-ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| |||||||||||||||||  || |||||||| | ||||||||||||||||||||||| || ||||||||||| ||||||    
T  22014356 ataaaatgacatatttttctcttgttaagtttcttctttgctttttaagtcaaaaatatatttatgtgctacttaaacttttaaagaataataaaa 22014261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 1331369 - 1331294
Alignment:
Q  227 cttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| ||  |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||    
T  1331369 cttgttaagttttttctttactttttatttcaaaaatatatttatgtgctacttgaacttttaaagaataataaaa 1331294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 17763141 - 17763048
Alignment:
Q  210 aaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||||||||||  ||||||||||||||||  ||||||||||| || |||||| || ||| ||||||||||||| |||| |||||||||||    
T  17763141 aaaatgacatattttttctcttgttaagtttctcttttactttttatttcaaaaatgtacttacgtgctacttgaaaatttatagaatgataaa 17763048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 13194301 - 13194203
Alignment:
Q  208 ataaaatgacatatttt----ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||    |||||||||||||||||  || ||||||| || |||||||||||||||||||| || || ||||| ||||||||||||    
T  13194301 ataaaatgacatattttttctctcttgttaagtttcttctttgctttttatttcaaaaatatatttatgtgctaattaaacttttagagaatgataaaa 13194203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 31719767 - 31719860
Alignment:
Q  209 taaaatgacatatttt--ctcttgttaagtttcttt-tactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    ||||||||||||||||  |||||||||||||| | | | ||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||    
T  31719767 taaaatgacatattttttctcttgttaagtttttctctgctttttattttaaaaatatatttatatgctacttgaacttttagagaatgataaa 31719860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 30759360 - 30759415
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||    
T  30759360 ctttttatttcaaaaatatatttatgtactacttgaaattttatagaatgataaaa 30759415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 41166536 - 41166455
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  || |||||||  | |||||||||||||| ||||||||||| ||||| ||||| ||||||    
T  41166536 ttttctcttgttaagtttcttctttgctttttatgtcaaaaatatatttatatgctacttgaacttttagagaataataaaa 41166455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 44085849 - 44085788
Alignment:
Q  241 tttactttttaattaaaaaatat--atttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||| |||||||| ||  |||||||||||||||||||||||| ||||||||||||    
T  44085849 tttactttttatttaaaaaaaatgtatttatgtgctacttgaaattttagagaatgataaaa 44085788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 5862343 - 5862441
Alignment:
Q  208 ataaaatgacatatttt---ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||||||||||||   ||||||| |||||||||  || ||||||  || |||||| ||||||||||||||||||| | ||| |||||||||||||    
T  5862343 ataaaatgacatatttttttctcttgtaaagtttcttctttgctttttctttcaaaaatgtatttatgtgctacttgaactattagagaatgataaaaa 5862441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 28790889 - 28790824
Alignment:
Q  224 tctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaatttta 287  Q
    ||||||||||||||||||  ||  |||||| || |||||||||||||||| |||||||||||||||    
T  28790889 tctcttgttaagtttcttctttgttttttatttcaaaaatatatttatgttctacttgaaatttta 28790824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 30761322 - 30761378
Alignment:
Q  241 tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgata 297  Q
    ||||| ||||| || |||||||||||||||| ||||||||| ||||| |||||||||    
T  30761322 tttaccttttatttcaaaaatatatttatgtactacttgaatttttatagaatgata 30761378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 11377395 - 11377442
Alignment:
Q  253 ttaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||| ||||||||||||| ||||| ||||| ||||||||||||    
T  11377395 ttaaaaaatgtatttatgtgctatttgaacttttagagaatgataaaa 11377442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 11051145 - 11051190
Alignment:
Q  255 aaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  11051145 aaaaaatgtatttatatgctacttgaacttttagagaatgataaaa 11051190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 27301180 - 27301274
Alignment:
Q  210 aaaatgacatattttctct--tgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||| |||||||||||||  ||||||| |||||  || ||||||| || |||||| ||  ||||||||||||||| ||||| |||||| |||||    
T  27301180 aaaattacatattttctctcttgttaagcttcttctttgctttttatttcaaaaatgtagctatgtgctacttgaacttttagagaatgttaaaa 27301274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 44741808 - 44741871
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagtt 309  Q
    ||||||| |||| |||| ||| || |||||||||||| ||||| |||||||| ||||||||||||    
T  44741808 ctttttatttaataaatgtatctacgtgctacttgaatttttagagaatgat-aaaatcttagtt 44741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 32223000 - 32223094
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| ||||||||||||||||  |||||||||| || |||| | ||||| ||||||||||||| ||||| ||||||||||||    
T  32223000 ataaaatgacatattttttcttgttaagtttcttctttactttttatttcaaaagtgtatttgtgtgctacttgaacttttagagaatgataaaa 32223094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 48338740 - 48338644
Alignment:
Q  208 ataaaatgacatattttctct--tgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| |||  |||||||||||||  || ||||||| || |||||| |||||||||| |||||||| ||||||||||||||||||    
T  48338740 ataaaatgacatattttttctattgttaagtttcttctttgctttttatttcaaaaatgtatttatgtgttacttgaacttttaaagaatgataaaa 48338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 18536346 - 18536440
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttcttttac--tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataa 298  Q
    |||||||||||||||||  ||||||||||||||||| | |  |||||| || |||||| ||||||||||||||||||| ||||| ||||||||||    
T  18536346 ataaaatgacatattttttctcttgttaagtttcttcttcgctttttatttcaaaaatgtatttatgtgctacttgaacttttagagaatgataa 18536440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 46471823 - 46471727
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||| ||  |||||||||| || |||||| |||||||||| ||||| || ||||| ||||||||||||    
T  46471823 ataaaatgacatattttttctcttgttaagttttttctttactttttatttcaaaaatgtatttatgtgatacttcaacttttagagaatgataaaa 46471727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 35014659 - 35014575
Alignment:
Q  218 atattttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||||||||||  ||  |||||| ||||||||| |||||||||||||||| || || || ||||||||||||    
T  35014659 atattttctcttgttaagtttcttcattgttttttatttaaaaaatgtatttatgtgctacttaaacttctagagaatgataaaa 35014575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 5122067 - 5122163
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||  ||  || ||||||| ||||||||  ||||||||||||||||||| ||||| | ||||||||||    
T  5122067 ataaaatgacatattttttctcttgttaagttctttctttgctttttatttaaaaaacgtatttatgtgctacttgaacttttatataatgataaaa 5122163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 14867163 - 14867067
Alignment:
Q  208 ataaaatgacatatt--ttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||  |||||||||||||||||||  |||||||||| ||  ||||||| |||||||| |||||||  |||||  |||||||||||    
T  14867163 ataaaatgacatattatttctcttgttaagtttcttctttactttttatttctaaaatatttttatgtgttacttgatcttttagggaatgataaaa 14867067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 36106172 - 36106253
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| ||||||||||||||  |||||||||| || |||||| |||||||||||| |||||| ||| | ||||||||||||    
T  36106172 ttttcttttgttaagtttcttctttactttttatttcaaaaatgtatttatgtgctccttgaactttaagagaatgataaaa 36106253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 48602221 - 48602300
Alignment:
Q  231 ttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagtt 309  Q
    |||||||||||  |||||||||| || |||||||| ||||||||||||||||| ||||| | |||||| ||||||||||||    
T  48602221 ttaagtttcttctttactttttatttcaaaaatatgtttatgtgctacttgaacttttagataatgat-aaaatcttagtt 48602300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 7783890 - 7783969
Alignment:
Q  221 ttttctcttgttaagtttct-tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||||||||||||| | ||||||||||| || |||||| ||||||||| ||||| ||  ||||| |||||||||||    
T  7783890 ttttctcttgttaagtttttctttactttttatttcaaaaatgtatttatgttctactagattttttagagaatgataaa 7783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 21069438 - 21069356
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||||||||||||||||  || ||||||  || |||||| ||||||||| ||||||||| | ||| |||||||||||||    
T  21069438 ttttctcttgttaagtttcttctttgctttttgtttcaaaaatgtatttatgtactacttgaactcttagagaatgataaaaa 21069356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 27743598 - 27743499
Alignment:
Q  208 ataaaatgacatatttt---ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaat 302  Q
    |||||||||||||||||   ||||||||||||||||  ||| ||||||  || |||||| ||||||||| ||||||||| | ||| |||||||| |||||    
T  27743598 ataaaatgacatatttttttctcttgttaagtttcttctttgctttttctttcaaaaatgtatttatgtactacttgaactcttagagaatgattaaaat 27743499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 25686171 - 25686242
Alignment:
Q  230 gttaagtttcttttac--tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||| |  |||||| || |||||| |||||| |||||||||||| ||||||||||||||||||    
T  25686171 gttaagtttctttttcgctttttattttaaaaatgtattta-gtgctacttgaacttttaaagaatgataaaa 25686242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 41325792 - 41325694
Alignment:
Q  208 ataaaatgacatattttctctt--gttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaat 302  Q
    ||||||||||||||||| ||||  ||||||||||||  ||  |||||  || |||||| ||||||||| ||||||||| | ||| ||||||||||||||    
T  41325792 ataaaatgacatattttttcttttgttaagtttcttctttgttttttctttcaaaaatgtatttatgtactacttgaactcttagagaatgataaaaat 41325694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 11031369 - 11031412
Alignment:
Q  256 aaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||| ||||||||||||| ||||||||||| |||||||||||    
T  11031369 aaaaatgtatttatgtgctatttgaaattttacagaatgataaa 11031412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 49641211 - 49641133
Alignment:
Q  224 tctcttgttaagtttc--ttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||  |||| ||||| | || |||||| |||||||||| |||||||| ||||| | ||||||||||    
T  49641211 tctcttgttaagtttcttttttgcttttcacttcaaaaatgtatttatgtgttacttgaacttttagataatgataaaa 49641133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 41260505 - 41260422
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaatttta 287  Q
    |||||||||||||||||  ||||||| ||||||||  ||| ||||||| || |||||| | |||||| |||||||||| |||||    
T  41260505 ataaaatgacatattttttctcttgtaaagtttcttctttgctttttatttcaaaaatctgtttatgggctacttgaactttta 41260422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 4642828 - 4642745
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaat 302  Q
    |||||||||||||||||||||  || ||||||   | |||||| |||||||||||||| |||| | ||| |||||||| |||||    
T  4642828 ttttctcttgttaagtttcttctttgctttttctatcaaaaatgtatttatgtgctacatgaattcttagagaatgattaaaat 4642745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 36203135 - 36203231
Alignment:
Q  208 ataaaatgacatattt--tctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||  ||||||||||||||||||  || ||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  36203135 ataaaatgacatatttgttctcttgttaagtttcttctttgctttttatttcaaaaatgtatttatgtgctacttgaacttttatagaatgataaaa 36203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 17989426 - 17989347
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataa 298  Q
    |||| ||||| ||||||||||  || ||||||| || |||||||||||||||||||||||||| ||||| ||||||||||    
T  17989426 ttttttcttgctaagtttcttcttttctttttatttcaaaaatatatttatgtgctacttgaacttttatagaatgataa 17989347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 34914525 - 34914431
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    ||||||||||||||||| |||||||| |||||||  || ||||||  ||||||||| ||||||||||||||||||| | ||| ||||| |||||||    
T  34914525 ataaaatgacatattttttcttgtta-gtttcttctttgctttttctttaaaaaatgtatttatgtgctacttgaactcttagagaataataaaaa 34914431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 35992286 - 35992379
Alignment:
Q  211 aaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||  |||||||||||||||||  |||||||||| || ||||   ||||||||||||||||||| ||||| ||||| ||||||    
T  35992286 aaatgacatattttttctcttgttaagtttcttctttactttttatttcaaaatggtatttatgtgctacttgaacttttagagaataataaaa 35992379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 32910098 - 32910152
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||| ||||    
T  32910098 tttttatttaaaaaacatatttatgtgctacttgaaattttagagaatgagaaaa 32910152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 11073093 - 11073150
Alignment:
Q  241 tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataa 298  Q
    ||||||||||| ||||||||  |||||||||||||||| |||||||| ||||||||||    
T  11073093 tttactttttatttaaaaaacgtatttatgtgctacttcaaattttagagaatgataa 11073150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 6248470 - 6248373
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||||||||||||  |||||||||||||||||  || ||||||   | |||||| ||||||||||||| ||||| ||||| |||| ||||||||    
T  6248470 ataaaatgacatatttttcctcttgttaagtttcttctttgctttttctatcaaaaatgtatttatgtgctaattgaacttttagagaaagataaaaa 6248373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 25865749 - 25865796
Alignment:
Q  253 ttaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  25865749 ttaaaaaatgtatttatgtgctacttgaaatgttagagaatgataaaa 25865796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 35979963 - 35980056
Alignment:
Q  211 aaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||  |||||||||||||||||  || ||||||| || ||||   ||||||||||||||||||| ||||| ||||| ||||||    
T  35979963 aaatgacatattttttctcttgttaagtttcttctttgctttttatttcaaaatggtatttatgtgctacttgaacttttagagaataataaaa 35980056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 52829190 - 52829109
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  ||  ||||||  | |||||||||||||||| || ||| |||||||| ||||||||||||    
T  52829190 ttttctcttgttaagtttcttctttgttttttatctcaaaaatatatttatgtactccttaaaattttatagaatgataaaa 52829109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 9249776 - 9249851
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttg 279  Q
    |||||||||||||||||  ||||||||||||||||  |||| |||||| || |||||| |||||||||| ||||||    
T  9249776 ataaaatgacatattttttctcttgttaagtttcttctttattttttatttcaaaaatgtatttatgtgttacttg 9249851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 10847226 - 10847309
Alignment:
Q  219 tattttctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||| |||||||||||||  ||| ||||||| || |||||| |||||| |||||| ||||| |||| || ||||||||||    
T  10847226 tattttcttttgttaagtttcttctttgctttttatttcaaaaatgtatttacgtgctatttgaacttttcaaaaatgataaaa 10847309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 19051518 - 19051414
Alignment:
Q  208 ataaaatgacatat--tttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatc 303  Q
    ||||||||||||||  ||||||||||| | ||||||  || ||||||| || |||||| ||||| ||||||||||||| ||| | ||||||||  |||||    
T  19051518 ataaaatgacatatattttctcttgttcaatttcttcttttctttttattttaaaaatgtatttctgtgctacttgaattttcagagaatgat-gaaatc 19051420  T
Q  304 ttagtt 309  Q
    ||||||    
T  19051419 ttagtt 19051414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 25559705 - 25559802
Alignment:
Q  208 ataaaatgacatattttctctt--gttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    ||||||||||||||||| ||||  ||||||||||||  || ||||||| || |||||| ||||||| | ||||||||| | |||  ||||||||||||    
T  25559705 ataaaatgacatattttatcttttgttaagtttcttctttgctttttatttcaaaaatgtatttatctactacttgaactcttagcgaatgataaaaa 25559802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 26344734 - 26344831
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||||||||||||  ||||||||||||||||  ||| ||||||  || |||||| |||| |||| |||| |||| | ||| |||||||||||||    
T  26344734 ataaaatgacatattttttctcttgttaagtttcttctttgctttttctttcaaaaatgtattcatgtactacctgaactcttagagaatgataaaaa 26344831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 18834149 - 18834191
Alignment:
Q  112 caaccgaaccgaatcaaaccaaaccaaaacataagaaacacac 154  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||    
T  18834149 caaccgaaccaaatcaaaccaaaccacaacataagaaaaacac 18834191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 44056115 - 44056034
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  ||  || |||| || || |||||| ||||||||||||||||||| ||||| | ||||||||||    
T  44056115 ttttctcttgttaagttcattctttgctttatatttcaaaaatgtatttatgtgctacttgaacttttagaaaatgataaaa 44056034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 6693789 - 6693822
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttctt 241  Q
    |||||||||||| |||||||||||||||||||||    
T  6693789 ataaaatgacattttttctcttgttaagtttctt 6693822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 9961930 - 9961967
Alignment:
Q  263 tatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  9961930 tatttatgtgctacttgaacttttagagaatgataaaa 9961967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 17652137 - 17652046
Alignment:
Q  213 atgacatattttctctt--gttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| ||||  ||||||||||||  ||  |||||| || |||||| ||||| ||||||||||||| ||||| ||||| ||||||    
T  17652137 atgacatattttttctttcgttaagtttcttctttgttttttatttcaaaaatgtatttttgtgctacttgaacttttagagaataataaaa 17652046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 29923055 - 29923092
Alignment:
Q  263 tatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  29923055 tatttatgtgttacttgaacttttaaagaatgataaaa 29923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 36782076 - 36782152
Alignment:
Q  224 tctcttgttaagtttc--ttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataa 298  Q
    ||||||||||||||||  |||| ||||||  ||||||||| |||||||||  |||||||| | ||| ||||||||||    
T  36782076 tctcttgttaagtttcttttttcctttttctttaaaaaatgtatttatgtattacttgaactcttagagaatgataa 36782152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 50951765 - 50951822
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaat 302  Q
    ||||||| || |||||| || |||||||||||||||||||||| | |||||| |||||    
T  50951765 ctttttatttcaaaaatgtaattatgtgctacttgaaattttatataatgatgaaaat 50951822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 8165230 - 8165325
Alignment:
Q  208 ataaaatgacatattt-tctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| ||| ||||| |||||||| |||  || ||||||| || |||||  ||||||||||||||||||| | ||| | ||||||||||    
T  8165230 ataaaatgacatttttctctctcgttaagttccttctttgctttttatttcaaaaacgtatttatgtgctacttgaactcttagataatgataaaa 8165325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 41751601 - 41751521
Alignment:
Q  221 ttttctcttgttaagtttctt-ttactttttaatta-aaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||||||||| |||||| ||  |||||||||  |||||| ||||||  ||||||||||| ||||| |||||||||||    
T  41751601 ttttctcttgttaattttcttctttgtttttaatttcaaaaatgtatttacatgctacttgaatttttagagaatgataaa 41751521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 26262 - 26166
Alignment:
Q  208 ataaaatgacatattttctct--tgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||| |||  |||||||||||||  || ||||||| || |||||| |||||||||| |||||||| ||||||||||||||||||    
T  26262 ataaaatgacatattttttctattgttaagtttcttctttgctttttatttcaaaaatgtatttatgtgttacttgaacttttaaagaatgataaaa 26166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 14906 - 14825
Alignment:
Q  221 ttttctcttgttaagttt-ctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||| |||  || |||| || ||||||||| |||||||||||| |||||| |||| |||||||||||||    
T  14906 ttttctcttgttaagttttcttcttttctttctatttaaaaaatgtatttatgtgctccttgaactttt-aagaatgataaaa 14825  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 892044 - 892125
Alignment:
Q  221 ttttctcttgttaagtttctttt--actttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||||||| |  |||||||| || |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  892044 ttttctcttgttaagtttcttctctactttttatttcaaaaatgtatttatgtgctacttgaacttttagagaatgataaaa 892125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 32190369 - 32190465
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||||||  || ||||||| || |||||| |||||||| |||||||||| ||||| ||||||||||||    
T  32190369 ataaaatgacatattttttctcttgttaagtttcttcttttctttttatttcaaaaatgtatttatgcgctacttgaacttttagagaatgataaaa 32190465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 13532003 - 13532057
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  13532003 tttttatttaaaaaacatatttatgtgctacttgaaattttatagaatgataaaa 13532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 22414206 - 22414109
Alignment:
Q  208 ataaaatgacatatttt---ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||   |||||||||||||||||  || |||| |   | |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  22414206 ataaaatgacatatttttttctcttgttaagtttcttctttgctttatctatcaaaaatctatttatgtgctacttgaacttttagagaatgataaaa 22414109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 29048942 - 29048847
Alignment:
Q  208 ataaaatgacatatttt-ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| |||| ||| |||||||||||||  || ||||||  || |||||| ||||||||||||||||||| | || |||||||||||||    
T  29048942 ataaaatgacatttttttctcatgttaagtttcttctttgctttttgtttcaaaaatgtatttatgtgctacttgaactctttaagaatgataaaa 29048847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 19134792 - 19134886
Alignment:
Q  211 aaatgacatatttt--ctcttgttaagtttcttttac---tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||  ||||||||||||||||| |     |||||| || |||||| ||||||||||||||||||| ||||| ||||| ||||||    
T  19134792 aaatgacatattttttctcttgttaagtttcttctttgtttttttatttcaaaaatgtatttatgtgctacttgaacttttagagaataataaaa 19134886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 14564796 - 14564729
Alignment:
Q  231 ttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgat 296  Q
    |||||||||||  || ||||||| || |||||| ||||||||||||| ||||| ||||||||||||||    
T  14564796 ttaagtttcttctttgctttttatttcaaaaatgtatttatgtgctatttgaacttttaaagaatgat 14564729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 308
Target Start/End: Complemental strand, 9686430 - 9686340
Alignment:
Q  221 ttttctcttgttaagtttct--tttactttt-taattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    ||||||||||||||||||||  ||| ||||| ||   ||||||| ||||||||||||||||||| | ||| |||||||| ||||| |||||    
T  9686430 ttttctcttgttaagtttcttctttgcttttctataaaaaaaatgtatttatgtgctacttgaactcttagagaatgattaaaattttagt 9686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 28633325 - 28633244
Alignment:
Q  221 ttttctcttgttaagtttc--ttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||  |||| |||| || || |||||| |||||||||| ||||| || ||||| | ||||||||||    
T  28633325 ttttctcttgttaagtttcttttttgctttctatttcaaaaatgtatttatgtgttacttaaacttttagaaaatgataaaa 28633244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 30752952 - 30752871
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||| |||||||||||  ||  ||| || || |||||| |||||||||| ||||| |||||||| ||||||||||||    
T  30752952 ttttctcttattaagtttcttctttgttttctatttcaaaaatgtatttatgtgatacttaaaattttagagaatgataaaa 30752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 13092393 - 13092298
Alignment:
Q  208 ataaaatgacata--ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||||||||  ||||||||||||||||||| |  |||||||||  || |||||| ||||| ||| |||||| || | ||| |||||||||||    
T  13092393 ataaaatgacataatttttctcttgttaagtttcctctttactttttctttcaaaaatgtatttttgtactacttaaactcttagagaatgataaa 13092298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 17306749 - 17306666
Alignment:
Q  211 aaatgacatattttctcttgttaagtttcttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgat 296  Q
    |||||||||||||||| |||||||||||| || | |||||| ||||||||| || |||||| | | ||||  ||||||||||||||    
T  17306749 aaatgacatattttcttttgttaagtttc-ttaaatttttatttaaaaaatgta-ttatgtccaatttgaccttttaaagaatgat 17306666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 11417418 - 11417370
Alignment:
Q  253 ttaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||| |||||| |||| |||||||| | |||||||||||||||||    
T  11417418 ttaaaaaacatatttttgtggtacttgaactcttaaagaatgataaaaa 11417370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 43202796 - 43202716
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||||||||||||||||  |||||||||| || |||||| ||||||||||||||||||| ||||| ||||| |||||    
T  43202796 ttttctcttgttaagtttcttctttactttttatttcaaaaatgtatttatgtgctacttgaacttttagagaataataaa 43202716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 27456723 - 27456631
Alignment:
Q  209 taaaatgacatatttt--ctcttgttaagtttctt---ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgat 296  Q
    ||||||||||||||||  |||||||||||||||||   || ||||||| ||||||||| |||||||||||||||| || ||||| ||||||||    
T  27456723 taaaatgacatattttttctcttgttaagtttcttcttttgctttttatttaaaaaatgtatttatgtgctacttaaacttttagagaatgat 27456631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 23033062 - 23032982
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||| ||  |||||||||| || |||||||||||||||||||||||| || |||| ||||||||||||    
T  23033062 ttttctcttgttaagttttttctttactttttatttcaaaaatatatttatgtgctacttg-aactttagagaatgataaaa 23032982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 6879783 - 6879879
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||||||  ||| |||||| || || ||||| |||| ||| |||||||| ||||| ||||||||||||    
T  6879783 ataaaatgacatattttttctcttgttaagtttcttctttattttttatttcaacaatatttttacgtgttacttgaatttttagagaatgataaaa 6879879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 47646447 - 47646515
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtg 272  Q
    |||||||||||||||||  |||||||||||||||||  |||||||||| ||||||||| ||||||||||    
T  47646447 ataaaatgacatattttttctcttgttaagtttcttctttactttttatttaaaaaatgtatttatgtg 47646515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 11834202 - 11834254
Alignment:
Q  256 aaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||| |||||    
T  11834202 aaaaatatatttatgtgctacttgaactcttaaagaatgattaaaattttagt 11834254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 11399518 - 11399423
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  |||||||||||||||||  || ||||||| ||  ||||| |||| |||| ||||||||| ||||| ||||||||||||    
T  11399518 ataaaatgacatattttgtctcttgttaagtttcttcgttgctttttatttctaaaatgtatt-atgttctacttgaacttttagagaatgataaaa 11399423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 30079304 - 30079358
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||    
T  30079304 tttttatttaaaaaacatatttatgtgctacttaaaattttagagaaagataaaa 30079358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 37375682 - 37375628
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  37375682 tttttatttaaaaaacatatttatgcgctacttgaaattttagagaatgagaaaa 37375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 40849238 - 40849157
Alignment:
Q  221 ttttctcttgttaagtttctttta--ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| ||||||||||||||||   ||||||| || |||||| |||||||||| | |||||| ||||| ||||||||||||    
T  40849238 ttttctgttgttaagtttcttttttgctttttatttcaaaaatgtatttatgtgttccttgaacttttagagaatgataaaa 40849157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 29628594 - 29628515
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataa 298  Q
    ||||||| |||||||||||||  |||||||||| ||  | |||||||||||||||||||| || ||||| ||||| ||||    
T  29628594 ttttctcgtgttaagtttcttcattactttttatttcgagaatatatttatgtgctacttaaacttttagagaataataa 29628515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 35495788 - 35495708
Alignment:
Q  221 ttttctcttgttaagtttctt-ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||||||||| ||   |||| |||  || || ||||||||||||||||||| ||||| ||||||||||||    
T  35495788 ttttctcttgttaagtttcttctttgcttttcattccaatatttatttatgtgctacttgaacttttacagaatgataaaa 35495708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 46147586 - 46147511
Alignment:
Q  227 cttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||  || ||||||| | |||||||||||||||||||| |||||| ||||| | ||| ||||||    
T  46147586 cttgttaagtttcttctttgctttttattcaaaaaatatatttatgtgctgcttgaacttttagacaataataaaa 46147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 2734684 - 2734637
Alignment:
Q  253 ttaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||| |||||| ||||| ||||| ||||||||||||    
T  2734684 ttaaaaaatatatttacgtgctaattgaacttttagagaatgataaaa 2734637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 47484009 - 47483928
Alignment:
Q  223 ttctcttgttaagtttctt--ttactttttaatt--aaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||  ||  |||||| ||  ||||||||||||||||| |||||||||||||||   ||||||||||    
T  47484009 ttctcttgttaagtttcttgtttgttttttatttcaaaaaaatatatttatgtactacttgaaattttattcaatgataaaa 47483928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 524569 - 524650
Alignment:
Q  221 ttttctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||||||||  ||| ||||||| || |||||| ||||||| ||||||||| | ||||| ||||| ||||||    
T  524569 ttttctattgttaagtttcttctttgctttttatttcaaaaatgtatttatatgctacttggacttttagagaataataaaa 524650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 29211303 - 29211377
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttcttttact-ttttaattaaaaaatatatttatgtgctacttgaa 281  Q
    ||||||||| ||  |||||||||||||||||||| |  | ||||| || |||||| |||||||||||||||||||    
T  29211303 ataaaatgatattgtttctcttgttaagtttcttcttttcttttattttaaaaatgtatttatgtgctacttgaa 29211377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 26214801 - 26214868
Alignment:
Q  216 acatattttctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaa 281  Q
    ||||||||||| |||||||||||||  ||| ||||||| || |||||| |||| |||||||| |||||    
T  26214801 acatattttcttttgttaagtttcttctttgctttttatttcaaaaatgtattcatgtgctatttgaa 26214868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 6363 - 6282
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  |||||||||| ||  ||||||| |||||||| |||||||| ||||| ||||||||||||    
T  6363 ttttctcttgttaagtttcttctttactttttatttctaaaatatttttatgtgttacttgaacttttagagaatgataaaa 6282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 2832086 - 2832167
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||||||  ||  |||||| || |||||||||||||||||||||||||| ||||  ||||||||||||    
T  2832086 ttttctcttgttaagtttcttctttggtttttatttcaaaaatatatttatgtgctacttgaacttttcgagaatgataaaa 2832167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 42362905 - 42362999
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| |||||||||||| |||| |||  |||||||||| || |||||  |||||||||||| |||| | ||||| ||||||||||||    
T  42362905 ataaaatgacattttttctcttgtttagttccttctttactttttatttcaaaaacgtatttatgtgctgcttgtacttttagagaatgataaaa 42362999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 44651317 - 44651256
Alignment:
Q  246 tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||| ||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  44651317 tttttatttaaaaaacgtatttatgtgctacttgaaattttagagaatga-aaaaatcttagt 44651256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 44662332 - 44662237
Alignment:
Q  208 ataaaatgacatatttt-ctcttgttaagtttctt-ttactttttaatta-aaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||| |||| ||||||| | ||||||| ||| ||||| |||  |||||||||||||| || |||||||| ||||||||||||||||||    
T  44662332 ataaaatgacatttttttctcttgtcaggtttcttcttagttttttatttcaaaaatatatttatatgttacttgaacttttaaagaatgataaaa 44662237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 301
Target Start/End: Complemental strand, 54122704 - 54122622
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||| ||||||||||||  || ||||||  || |||||| ||||||||||||||||||| | ||| |||||||||||||    
T  54122704 ttttctctggttaagtttcttatttgctttttcttttaaaaatgtatttatgtgctacttgaactcttagagaatgataaaaa 54122622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 45629589 - 45629485
Alignment:
Q  208 ataaaatgacatattttctctt--gttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatc 303  Q
    ||||||||||||||||| | ||  ||||||||||||  ||  |||||  || |||||| ||||||||| ||||||||| ||||||||||||||||| ||     
T  45629589 ataaaatgacatattttttattttgttaagtttcttctttgttttttctttcaaaaatctatttatgtactacttgaatttttaaagaatgataaatatt 45629490  T
Q  304 ttagt 308  Q
    |||||    
T  45629489 ttagt 45629485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 4669085 - 4669032
Alignment:
Q  247 ttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||| || |||||| ||||||||||||||||||| ||||| ||||||||||||    
T  4669085 ttttatttcaaaaatgtatttatgtgctacttgaacttttagagaatgataaaa 4669032  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 25918990 - 25919042
Alignment:
Q  256 aaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||| ||||||||||||||||||| | ||| |||||||||||||| |||||    
T  25918990 aaaaatgtatttatgtgctacttgaactcttagagaatgataaaaattttagt 25919042  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 308
Target Start/End: Complemental strand, 26758623 - 26758521
Alignment:
Q  211 aaatgacatatttt--ctcttgttaagtttct--tttactttttaatt-aaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatctt 305  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||  || ||||||| |||| |||| ||||||||| | ||| |||||||||| ||| ||    
T  26758623 aaatgacatattttttctcttgttaagtttcttatttactttttctttaaaaaaatgtattaatgtactacttgaactcttacagaatgataacaatttt 26758524  T
Q  306 agt 308  Q
    |||    
T  26758523 agt 26758521  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 55467343 - 55467423
Alignment:
Q  221 ttttctcttgttaagtttcttttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||| |||||||||||||| |  |||||  || |||||| ||||||||| ||||||||| | ||| |||||||||||||    
T  55467343 ttttcttttgttaagtttcttctgttttttctttcaaaaatgtatttatgtactacttgaactcttagagaatgataaaaa 55467423  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 36330376 - 36330454
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgata 297  Q
    |||||| ||||||||||||||  ||  |||||| || ||| ||||||||| |||||||||||| ||||| |||||||||    
T  36330376 ttttcttttgttaagtttcttccttgttttttattttaaagatatatttacgtgctacttgaatttttagagaatgata 36330454  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 301
Target Start/End: Original strand, 45914904 - 45914986
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaa 301  Q
    |||||||||||||||||||||  ||  |||||  || |||||| ||||||||| |||||| || | |||||||||||||||||    
T  45914904 ttttctcttgttaagtttcttgtttgttttttcttttaaaaatgtatttatgtactacttaaactcttaaagaatgataaaaa 45914986  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 10481305 - 10481399
Alignment:
Q  208 ataaaatgacatattttctcttgttaagtttctt-ttac-tttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| ||||| |||| ||||||||| |||||| |||  |||||| || |||||| |||||||||||||||| || ||||| | ||||||||||    
T  10481305 ataaaaagacattttttgtcttgttaaatttcttcttagatttttatttcaaaaatgtatttatgtgctactttaacttttagaaaatgataaaa 10481399  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 20846871 - 20846775
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  ||||||| |||||||||  ||| |||||| ||||||||| || ||||||  |  ||||| ||||| ||||||||||||    
T  20846871 ataaaatgacatattttttctcttgtaaagtttcttctttattttttatttaaaaaatgtaattatgtattgtttgaacttttagagaatgataaaa 20846775  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 5640472 - 5640509
Alignment:
Q  263 tatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  5640472 tatttacgtgctacttgaaattttagagaatgataaaa 5640509  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 8355675 - 8355630
Alignment:
Q  254 taaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||    
T  8355675 taaaaaatgtatttatgtgctacttgaactcttagagaatgataaa 8355630  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 10481119 - 10481151
Alignment:
Q  29 aaaatcatatttgatttggatgtatttggatca 61  Q
    ||||||||||||| |||||||||||||||||||    
T  10481119 aaaatcatatttggtttggatgtatttggatca 10481151  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 428042 - 427946
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctttta--ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  ||||||||||||||||| |   ||||||| || ||||||||||||||||| |||  ||| | ||| ||||||||||||    
T  428042 ataaaatgacatattttttctcttgttaagtttcttcttgcctttttatttcaaaaatatatttatgtgttacaagaattgttagagaatgataaaa 427946  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 3129350 - 3129423
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaa 292  Q
    |||||||||||||||||||||  || | ||||| || |||||| ||||||||||||||||||| ||||| ||||    
T  3129350 ttttctcttgttaagtttcttctttgcattttatttcaaaaatgtatttatgtgctacttgaacttttagagaa 3129423  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 9012521 - 9012617
Alignment:
Q  208 ataaaatgacatat--tttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||||||||||  ||||||||||||||||||||  || || || | || ||| || |||||||||||||||| || ||||| ||||||||||||    
T  9012521 ataaaatgacatatattttctcttgttaagtttcttctttgctattaacttcaaagatgtatttatgtgctacttaaacttttagagaatgataaaa 9012617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 24681773 - 24681878
Alignment:
Q  208 ataaaatgacatatttt---ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaat 302  Q
    |||||||||||||||||   |||||||||||||||||  ||  |||||   | |||||| ||||||||||||||||||| | ||| |||||||| |||||    
T  24681773 ataaaatgacatatttttttctcttgttaagtttcttctttgttttttctatcaaaaatgtatttatgtgctacttgaactcttagagaatgattaaaat 24681872  T
Q  303 cttagt 308  Q
     |||||    
T  24681873 tttagt 24681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 40436793 - 40436738
Alignment:
Q  245 ctttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    ||||||| ||||||||  ||||||||||||| || |||||||| ||||||||||||    
T  40436793 ctttttatttaaaaaacgtatttatgtgctatttaaaattttagagaatgataaaa 40436738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 12073908 - 12073999
Alignment:
Q  210 aaaatgacatatttt--ctcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||  |||||| |||||||||  ||| ||||||||||||||||| |||   ||| ||||||||| ||| | ||||||||||||    
T  12073908 aaaatgacatattttttctcttgctaagtttctactttgctttttaattaaaaaatgtat---tgttctacttgaactttaagagaatgataaaa 12073999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 14185572 - 14185653
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||| ||  || ||| ||| || |||||| |||||||||| ||||| || ||||| ||||||||||||    
T  14185572 ttttctcttgttaagtttattggttgcttgttatttcaaaaatgtatttatgtgttacttaaacttttagagaatgataaaa 14185653  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 18755025 - 18755114
Alignment:
Q  221 ttttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||||||||||||||||||  ||| |||||  || || ||| ||||||||| |||||||||   ||| |||||||| |||||||||||    
T  18755025 ttttctcttgttaagtttcttctttattttttctttcaataatgtatttatgttctacttgaacacttagagaatgatgaaaatcttagt 18755114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 27674916 - 27674820
Alignment:
Q  208 ataaaatgacatatttt--ctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||||  ||||| |||||||  ||  || ||||||| || ||||   ||||||||||||||||||| |||| |||||||||||||    
T  27674916 ataaaatgacatattttttctcttcttaagttcattctttgctttttatttcaaaagcgtatttatgtgctacttgaactttttaagaatgataaaa 27674820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 28441866 - 28441770
Alignment:
Q  208 ataaaatgacatatt--ttctcttgttaagtttctt--ttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaa 300  Q
    |||||||||||||||  |||| ||||||||||||||  ||  |||||| || ||||||   ||||||||||||||||| ||||| | ||||||||||    
T  28441866 ataaaatgacatattctttcttttgttaagtttcttctttgttttttatttcaaaaatggttttatgtgctacttgaacttttagataatgataaaa 28441770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 37162357 - 37162441
Alignment:
Q  226 tcttgttaagtttct--tttactttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||||||||||||  ||||||||||   | |||||| |||||||||| |||||||| | ||| |||||||| ||||| |||||    
T  37162357 tcttgttaagtttcttctttactttttctatcaaaaatgtatttatgtgttacttgaactcttagagaatgattaaaattttagt 37162441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 13325645 - 13325593
Alignment:
Q  256 aaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatcttagt 308  Q
    |||||||||| ||||||||||||||| | ||| |||||||| ||||| |||||    
T  13325645 aaaaatatatatatgtgctacttgaactcttagagaatgattaaaattttagt 13325593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 15452395 - 15452447
Alignment:
Q  247 ttttaattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaa 299  Q
    ||||| || |||||| |||||| |||||||||||| ||||| |||||||||||    
T  15452395 ttttatttcaaaaatgtatttacgtgctacttgaacttttagagaatgataaa 15452447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 20318 - 20422
Alignment:
Q  208 ataaaatgacatattttctctt--gttaagtttcttttacttttt--aattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatc 303  Q
    ||||||||| ||||||| ||||  ||||||||||||||   ||||  | |||||||| |||||||||||||| ||||| | ||| ||||||||| ||||     
T  20318 ataaaatgatatattttttctttagttaagtttcttttttgtttttcatttaaaaaaaatatttatgtgctaattgaactcttacagaatgatacaaatt 20417  T
Q  304 ttagt 308  Q
    |||||    
T  20418 ttagt 20422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 28210 - 28314
Alignment:
Q  208 ataaaatgacatattttctctt--gttaagtttcttttacttttt--aattaaaaaatatatttatgtgctacttgaaattttaaagaatgataaaaatc 303  Q
    ||||||||| ||||||| ||||  ||||||||||||||   ||||  | |||||||| |||||||||||||| ||||| | ||| ||||||||| ||||     
T  28210 ataaaatgatatattttttctttagttaagtttcttttttgtttttcatttaaaaaaaatatttatgtgctaattgaactcttacagaatgatacaaatt 28309  T
Q  304 ttagt 308  Q
    |||||    
T  28310 ttagt 28314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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