View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_31 (Length: 267)
Name: NF2211_high_31
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 2917754 - 2917991
Alignment:
| Q |
20 |
tgatgatagaaaaggtatcatggtatggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaaa |
119 |
Q |
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| T |
2917754 |
tgatgatagaaaatgtatcatggtatggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaaa |
2917853 |
T |
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| Q |
120 |
ttcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaaccaccaatcaactcaagtattgtctcgtagaataagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917854 |
ttcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaaccaccaatcaactcaagtattgtctcgtagaataagt |
2917953 |
T |
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| Q |
220 |
aggctattttgcagaaatagtgtaatgttgaccctttg |
257 |
Q |
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| T |
2917954 |
aggctattttgcagaaatagtgtaatgttgaccctttg |
2917991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 37792719 - 37792882
Alignment:
| Q |
19 |
atgatgatagaaaaggtatcatggtatggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaa |
118 |
Q |
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| T |
37792719 |
atgatgatagaaaatgttttatggtatgaacagaatttgatttgaacttgttcaattttttggggctaaatgtctcatctgaaggaacatagatatcaaa |
37792818 |
T |
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| Q |
119 |
attcaaagcttgtggcttgttccaagttgattgacctaaagttttccatatagatatccattaa |
182 |
Q |
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| T |
37792819 |
attcacagcttgtggcttactccaagttgctggacctaaagttattcatatagagatccattaa |
37792882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 3017172 - 3017099
Alignment:
| Q |
45 |
tggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaa |
118 |
Q |
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| T |
3017172 |
tggatagaatttgatttgatctccttcaatttgttagggctaaatatctcatctgaaggaacatatatatcaaa |
3017099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 28021291 - 28021429
Alignment:
| Q |
20 |
tgatgatagaaaaggtatcatggtatggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaaa |
119 |
Q |
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||||||||||||| || | |||||||| ||||||||||||||||||||||||||| || | || ||||| ||||||| ||||||||||||||| ||||| |
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| T |
28021291 |
tgatgatagaaaatgttttatggtatgaacagaatttgatttgaacttcttcaattttttgaggctaaatatctcatccgaaggaacatagatatcaaaa |
28021390 |
T |
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| Q |
120 |
ttcaaagcttgtggcttgttccaagttgattgacctaaa |
158 |
Q |
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|||| ||||||||| ||| ||||||||||| |||||||| |
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| T |
28021391 |
ttcacagcttgtggtttgctccaagttgatggacctaaa |
28021429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 18360999 - 18360880
Alignment:
| Q |
45 |
tggacagaatttgatttgaacttcttcaatattctagggttaaatttctcatctgaaggaacatagatagcaaaattcaaagcttgtggcttgttccaag |
144 |
Q |
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|||| |||||||||||||| || ||||||| | ||||| ||||| ||||||||||||||||||| ||| ||||||| |||| |||| || || || |
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| T |
18360999 |
tggatagaatttgatttgatctccttcaatttgttagggctaaatatctcatctgaaggaacatatatatcaaaatttgttgcttttggcctgctctcag |
18360900 |
T |
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| Q |
145 |
ttgattgacctaaagttttc |
164 |
Q |
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| T |
18360899 |
ttgatggacctaaagttttc |
18360880 |
T |
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