View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_32 (Length: 266)
Name: NF2211_high_32
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 33731279 - 33731520
Alignment:
| Q |
8 |
tgagatgaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
107 |
Q |
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| T |
33731279 |
tgagaagaagaacttgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
33731378 |
T |
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| Q |
108 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
207 |
Q |
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| T |
33731379 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
33731478 |
T |
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| Q |
208 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacct |
249 |
Q |
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| T |
33731479 |
aggatgaaaaggaggaggaagagtgtgtcttctgctaaacct |
33731520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 33802658 - 33802899
Alignment:
| Q |
8 |
tgagatgaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
107 |
Q |
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| T |
33802658 |
tgagaagaagaacatgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtac |
33802757 |
T |
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| Q |
108 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
207 |
Q |
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| T |
33802758 |
tacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgata |
33802857 |
T |
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| Q |
208 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacct |
249 |
Q |
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| T |
33802858 |
aggatgaaaaggaggaggaagagtgcgtcttctgctaaacct |
33802899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 6126368 - 6126204
Alignment:
| Q |
74 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
173 |
Q |
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| T |
6126368 |
ggagggctattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatcaagaacttatcccaaaatgtttcttgcg |
6126269 |
T |
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| Q |
174 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctg |
241 |
Q |
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| T |
6126268 |
gtaaagaagacgtgtt---gacattgtcttgatgaatatgaaaaggaggaggaagagtgcgtcttctg |
6126204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 6145784 - 6145621
Alignment:
| Q |
74 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
173 |
Q |
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|||| |||||||||||| ||| || | |||| ||||||| ||||||| | || |||| ||||||||| ||| | ||||||||||||||||||| | |
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| T |
6145784 |
ggagggctattaatttcggaccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt--- |
6145688 |
T |
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| Q |
174 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctgct |
243 |
Q |
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|| | ||||||||||| |||||||||||||| | |||||||||||||||||| |||| |||||||||| |
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| T |
6145687 |
gtgatgaagacatgtt---gacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgct |
6145621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34283454 - 34283397
Alignment:
| Q |
8 |
tgagatgaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcag |
65 |
Q |
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| T |
34283454 |
tgagaagaagaacttgctgctcctcttattgctgcagagggatatagaaatgatgcag |
34283397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 10343368 - 10343426
Alignment:
| Q |
82 |
attaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcat |
140 |
Q |
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|||||||| ||||||||||||||||||| || ||||||| ||||||||||| |||||| |
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| T |
10343368 |
attaatttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcat |
10343426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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