View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_36 (Length: 253)
Name: NF2211_high_36
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_36 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 3083134 - 3083289
Alignment:
| Q |
1 |
ctgctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgctt |
100 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| |||||||||| ||| |
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| T |
3083134 |
ctgctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttactt |
3083233 |
T |
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| Q |
101 |
acctcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac |
157 |
Q |
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| T |
3083234 |
acctca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac |
3083289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 38403950 - 38404072
Alignment:
| Q |
35 |
ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt |
134 |
Q |
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| T |
38403950 |
ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt |
38404049 |
T |
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| Q |
135 |
ttctttgagaaaacaatggctac |
157 |
Q |
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| T |
38404050 |
ctctctgagcaaacaatggctac |
38404072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 38404139 - 38404220
Alignment:
| Q |
163 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt |
244 |
Q |
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| T |
38404139 |
aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt |
38404220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 40909883 - 40910038
Alignment:
| Q |
1 |
ctgctattggagttaacatacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgctt |
100 |
Q |
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| T |
40909883 |
ctgctattggagttaacatacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttactt |
40909982 |
T |
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| Q |
101 |
acctcacgattttaagtagctatttgactgcattttctttgagaaaacaatggctac |
157 |
Q |
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| T |
40909983 |
acctca-gatttatagtagctatttaactgcattctctctgagcaaacaatggctac |
40910038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 33814113 - 33814194
Alignment:
| Q |
163 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt |
244 |
Q |
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| T |
33814113 |
aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt |
33814194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 33873583 - 33873664
Alignment:
| Q |
163 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt |
244 |
Q |
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| T |
33873583 |
aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt |
33873664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 99540 - 99662
Alignment:
| Q |
35 |
ttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgactgcatt |
134 |
Q |
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||||||| ||||||||||||||| | || |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
99540 |
ttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaagtagctatttgactgcatt |
99639 |
T |
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| Q |
135 |
ttctttgagaaaacaatggctac |
157 |
Q |
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| T |
99640 |
ctctctgagcaaacaatggctac |
99662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 99729 - 99810
Alignment:
| Q |
163 |
aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattgatattctt |
244 |
Q |
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|||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
99729 |
aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattgattttctt |
99810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 24469303 - 24469255
Alignment:
| Q |
109 |
attttaagtagctatttgactgcattttctttgagaaaacaatggctac |
157 |
Q |
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| T |
24469303 |
attttaagtagctatttgaccacattctctctgagcaaacaatggctac |
24469255 |
T |
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