View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_high_47 (Length: 235)

Name: NF2211_high_47
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_high_47
NF2211_high_47
[»] chr4 (5 HSPs)
chr4 (50-196)||(55585895-55586041)
chr4 (71-193)||(3216979-3217104)
chr4 (64-143)||(16419591-16419670)
chr4 (50-168)||(53435866-53435984)
chr4 (85-168)||(46673082-46673165)
[»] chr7 (4 HSPs)
chr7 (48-192)||(9954794-9954938)
chr7 (50-169)||(23690420-23690540)
chr7 (50-169)||(23689228-23689348)
chr7 (64-140)||(23409011-23409087)
[»] chr2 (2 HSPs)
chr2 (50-192)||(44680290-44680432)
chr2 (50-168)||(41362344-41362463)
[»] scaffold0007 (1 HSPs)
scaffold0007 (50-192)||(274739-274881)
[»] scaffold0049 (1 HSPs)
scaffold0049 (50-192)||(39473-39615)
[»] scaffold0434 (1 HSPs)
scaffold0434 (64-192)||(10276-10404)
[»] chr3 (2 HSPs)
chr3 (64-193)||(558900-559030)
chr3 (86-193)||(22833521-22833630)
[»] chr8 (1 HSPs)
chr8 (86-193)||(5592432-5592541)
[»] chr1 (2 HSPs)
chr1 (64-168)||(12179110-12179214)
chr1 (46-79)||(1935385-1935418)
[»] chr6 (5 HSPs)
chr6 (50-166)||(33353260-33353376)
chr6 (1-42)||(13484914-13484955)
chr6 (64-124)||(35022913-35022973)
chr6 (50-125)||(2867392-2867467)
chr6 (50-125)||(2879180-2879255)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 55586041 - 55585895
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaa 149  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  55586041 tgataatgtctcattagttagtatttttacggtcaattttaagtaattttcagttaagttgaattaattcagagtgcttttatagtcaaattgagcaaaa 55585942  T
Q  150 aagagaattttgaaaatatccaactgtgttagtcattcttgttttaa 196  Q
    ||||| |||||||||||||| ||||||||| || |||||||||||||    
T  55585941 aagaggattttgaaaatatctaactgtgttggtaattcttgttttaa 55585895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 3217104 - 3216979
Alignment:
Q  71 tatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgag---gaaaaaagagaattttgaaaata 167  Q
    |||||||||  ||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    ||||||||| ||||||||||||    
T  3217104 tatttttacatttatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaaaaaaaaagaggattttgaaaata 3217005  T
Q  168 tccaactgtgttagtcattcttgttt 193  Q
    ||||| ||||||||| ||||||||||    
T  3217004 tccaattgtgttagttattcttgttt 3216979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 16419591 - 16419670
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactga 143  Q
    |||||||||||||||  |||| |||||||||||||| |||| |||||||| |||||| ||||||||||||||||||||||    
T  16419591 tagttagtatttttatagttatttttaagtagttttaagttgagttgaataaattcaaagtgcttttatagtcaaactga 16419670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 53435866 - 53435984
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtg-cttttatagtcaaactgaggaaa 148  Q
    ||||||||||||  |||||||||||||||  || | |||||||||||||| |||||| |||||| |||||| ||||  ||||  ||||||||||| || |    
T  53435866 tgataatgtctctatagttagtatttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtgtattttggagtcaaactga-gata 53435964  T
Q  149 aaagagaattttgaaaatat 168  Q
    |||||| ||||| |||||||    
T  53435965 aaagaggattttaaaaatat 53435984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 46673165 - 46673082
Alignment:
Q  85 attttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaaaagagaattttgaaaatat 168  Q
    |||| |||||||||| ||||||||||||| | || |||||||||||| ||| || ||||| |||| |||| ||| |||||||||    
T  46673165 atttcaagtagttttgagttaagttgaatcattttagagtgcttttaaagttaagctgagcaaaatagaggattgtgaaaatat 46673082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 9954938 - 9954794
Alignment:
Q  48 aatgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaa 147  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  9954938 aatgataatgtctcattagttagtatttttacagtcaattttaagtagttttcagtttagttgaattaattcagaatgcttttatagtcaaactgagcaa 9954839  T
Q  148 aaaagagaattttgaaaatatccaactgtgttagtcattcttgtt 192  Q
    ||||||  ||||| |||||||||||||||||||||||||||||||    
T  9954838 aaaagatgattttaaaaatatccaactgtgttagtcattcttgtt 9954794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 23690540 - 23690420
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggt-taattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaa 148  Q
    ||||||||||||| |||||||||||||||||||    |||||||||||||||||| ||||||| | |||  || ||| ||||||||||||||| || |||    
T  23690540 tgataatgtctcaatagttagtatttttacggtcgttttttaagtagttttcagtaaagttgagtcaataaagggtgtttttatagtcaaactaagcaaa 23690441  T
Q  149 aaagagaattttgaaaatatc 169  Q
    |||||| ||||||||||||||    
T  23690440 aaagaggattttgaaaatatc 23690420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 23689348 - 23689228
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggt-taattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaa 148  Q
    ||||||||||||| |||||||||||||||||||    |||||||||||||||||| ||||||| | |||  || ||  ||||||||||||||| || |||    
T  23689348 tgataatgtctcaatagttagtatttttacggtcgttttttaagtagttttcagtaaagttgagtcaataaagggtatttttatagtcaaactaagcaaa 23689249  T
Q  149 aaagagaattttgaaaatatc 169  Q
    |||||| ||||||||||||||    
T  23689248 aaagaggattttgaaaatatc 23689228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 23409011 - 23409087
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaac 140  Q
    |||||||||||||||  || | |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  23409011 tagttagtatttttatagtcatttttaagtagttttaagttaagttgaattaattcagagtacttttaaagtcaaac 23409087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 44680432 - 44680290
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaa 149  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||    
T  44680432 tgataatgtctcattagttagtatttttacagtcaattttaagtagttttcagttaagttgaatcaattcaaagtacttttatagtcaaactgagcaaaa 44680333  T
Q  150 aagagaattttgaaaatatccaactgtgttagtcattcttgtt 192  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  44680332 aagaggattttgaaaatatccagctgtgttagtcattcttgtt 44680290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 41362344 - 41362463
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgag-gaaa 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||  ||| ||| |||||  ||| |||  |||    
T  41362344 tgataatgtctcattagttagtatttttacggtcaattttaagtagttttcagttaagttgagtcaattcatggtgttttaatagtttaaccgagcaaaa 41362443  T
Q  149 aaagagaattttgaaaatat 168  Q
    |||||| |||||||||||||    
T  41362444 aaagaggattttgaaaatat 41362463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 274739 - 274881
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaa 149  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  274739 tgataatgtctcattagttaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgcttttatagtcaaaccgagcaaaa 274838  T
Q  150 aagagaattttgaaaatatccaactgtgttagtcattcttgtt 192  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  274839 aagaggattttgaaaatatccagttgtgttagtcattcttgtt 274881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 39615 - 39473
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaa 149  Q
    |||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||||    
T  39615 tgataatgtctcattaattaatatttttacagtcaattttaagtagttttcagttaagttgaatcaattcagagtgtttttatagtcaaactgcgcaaaa 39516  T
Q  150 aagagaattttgaaaatatccaactgtgttagtcattcttgtt 192  Q
    ||||| ||||||||||||||||  |||||||||||||||||||    
T  39515 aagaggattttgaaaatatccagttgtgttagtcattcttgtt 39473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 10276 - 10404
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaaaagagaattttgaa 163  Q
    |||||||||||||||| || | || ||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  10276 tagttagtatttttacagtcagttctaaatagttttaagttaagttgaatcaattcaaagtgcttttatagtcaaactgagcaaaaaagagaattttgaa 10375  T
Q  164 aatatccaactgtgttagtcattcttgtt 192  Q
    ||||||||  | |||||||||||||||||    
T  10376 aatatccagttatgttagtcattcttgtt 10404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 558900 - 559030
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaa-aaaagagaattttga 162  Q
    ||||| ||||||||||  | | |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| || ||||||| |||||||    
T  558900 tagtttgtatttttacattcatttttaagtagttttaagttaagttgaatcaattcagagtgcttttaaagtcaaactgagcaagaaaagaggattttga 558999  T
Q  163 aaatatccaactgtgttagtcattcttgttt 193  Q
    |||||||||| |||||| || ||||||||||    
T  559000 aaatatccaattgtgttggttattcttgttt 559030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 22833630 - 22833521
Alignment:
Q  86 ttttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgag--gaaaaaagagaattttgaaaatatccaactgtgttagtc 183  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||   ||||||||| ||||||||||||||||| |||||| ||     
T  22833630 ttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatatccaattgtgttggtt 22833531  T
Q  184 attcttgttt 193  Q
    ||||||||||    
T  22833530 attcttgttt 22833521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 193
Target Start/End: Original strand, 5592432 - 5592541
Alignment:
Q  86 ttttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgag--gaaaaaagagaattttgaaaatatccaactgtgttagtc 183  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||   ||||||||| ||||||||||||||||| |||||| ||     
T  5592432 ttttaagtagttttaagttaagttgaatcaattctgagtgcttttaaagtcaaactgagcaaaaaaaagaggattttgaaaatatccaattgtgttggtt 5592531  T
Q  184 attcttgttt 193  Q
    ||||||||||    
T  5592532 attcttgttt 5592541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 12179214 - 12179110
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaaaagagaattttgaa 163  Q
    ||||||||||||||||  ||| |||||||||||||| ||||||||||||| |||| |||||||||||| | ||||| | || ||||||||| ||||||||    
T  12179214 tagttagtatttttacatttatttttaagtagttttaagttaagttgaatcaattgagagtgcttttaaaatcaaattaagcaaaaaagaggattttgaa 12179115  T
Q  164 aatat 168  Q
    |||||    
T  12179114 aatat 12179110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 1935418 - 1935385
Alignment:
Q  46 ctaatgataatgtctcattagttagtatttttac 79  Q
    ||||||||||||||||||||||||||||||||||    
T  1935418 ctaatgataatgtctcattagttagtatttttac 1935385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 33353260 - 33353376
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtgcttttatagtcaaactgaggaaaa 149  Q
    ||||||||||||| ||||||||  |||||||||   |||||| ||||||||||||||||||| | |||  || ||| ||||||||||||||| || ||||    
T  33353260 tgataatgtctcaatagttagtgattttacggtcgtttttaaatagttttcagttaagttgagtcaataaagggtgtttttatagtcaaactaagcaaaa 33353359  T
Q  150 aagagaattttgaaaat 166  Q
    ||||| |||||||||||    
T  33353360 aagaggattttgaaaat 33353376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13484955 - 13484914
Alignment:
Q  1 gattactgtttatgaagagttttctactacctttgccaaatt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13484955 gattactgtttatgaagagttttctactacctttgccaaatt 13484914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 35022913 - 35022973
Alignment:
Q  64 tagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagt 124  Q
    |||||||||||||||| || | ||||| |||||||| ||||||||||||| ||||||||||    
T  35022913 tagttagtatttttacagtcatttttatgtagttttaagttaagttgaatcaattcagagt 35022973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 2867392 - 2867467
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtg 125  Q
    ||||||||||||  |||||||||||||||  || | |||||||||||||| |||||| |||||| |||||| ||||    
T  2867392 tgataatgtctctatagttagtatttttagagtcacttttaagtagttttaagttaaattgaatcaattcaaagtg 2867467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 2879180 - 2879255
Alignment:
Q  50 tgataatgtctcattagttagtatttttacggttaattttaagtagttttcagttaagttgaattaattcagagtg 125  Q
    ||||||||||||  |||||||||||||||  || | |||||||||||||| |||||| |||||| |||||| ||||    
T  2879180 tgataatgtctctatagttagtatttttagagtcatttttaagtagttttaagttaaattgaatcaattcaaagtg 2879255  T

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