View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_49 (Length: 226)
Name: NF2211_high_49
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 54543397 - 54543216
Alignment:
| Q |
21 |
ttgatagcactcatcttgaaagaaggtgccaatgataggctaggtatggcgccatcatcatagccacaacctcatctcttcaatggatgcatgagtggga |
120 |
Q |
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| T |
54543397 |
ttgataccactcatcttgaaagaaggtgccaatgatagtctaggtatggcgccatcatcatagccacaacctcatctcttcaatggatgcatgagtggga |
54543298 |
T |
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| Q |
121 |
agcagatcaaataatttttgaaatggattgcaaagtggtggtcgatgtggtgcacaattcaacatgattttacaaggcattt |
202 |
Q |
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| T |
54543297 |
agcagatcaaataatttttgaaatggattgcaaagtggtggtcgatgtggtgcacaattcaacatgattttataaggcattt |
54543216 |
T |
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