View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_high_6 (Length: 493)
Name: NF2211_high_6
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 96 - 477
Target Start/End: Original strand, 33383343 - 33383724
Alignment:
| Q |
96 |
tccacaaaagtttatgaataaatcattagttttatcctccagagataaagtaatgacttatgtcacattggtcctttaaatatttatgccatcatattgg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33383343 |
tccacaaaagtttatgaataaatcattagttttatcctccagagataaagtaatgacttatgtcacattggtcctttaaatatatatgccatcatattgg |
33383442 |
T |
|
| Q |
196 |
tcccatgatttccaaattaattcttcaaacaatactactgcaaaatttatcattgttgttactttaaacaaccattttgatgaagttcatgaccaattaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383443 |
tcccatgatttccaaattaattcttcaaacaatactactgcaaaatttatcattgttgttactttaaacaaccattttgatgaagttcatgaccaattaa |
33383542 |
T |
|
| Q |
296 |
tttgnnnnnnngatccactgaatgattattatagtgacacttaatgttttaaggaactaatttagagattaaaaaacttaaaagattaatgtttttatga |
395 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383543 |
tttgaaaaaaagatccactgaatgattattatagtgacacttaatgttttaaggaactaatttagagattaaaaaacttaaaagattaatgtttttatga |
33383642 |
T |
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| Q |
396 |
aagtaatatggacttgttaacttgacatcgcacaaaaccgacatatagtttgcctaatgcttccgtcaaatgagctgtgctg |
477 |
Q |
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| T |
33383643 |
aagtaatatggacttgttaacttgacatcgcacaaaaccaacatatagtttgcctaatgcttccgtcaaatgagctgtgctg |
33383724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 307 - 477
Target Start/End: Original strand, 33269090 - 33269258
Alignment:
| Q |
307 |
gatccactgaatgattattatagtgacacttaatgttttaaggaactaatttagagattaaaaaacttaaaagattaatgtttttatgaaagtaatatgg |
406 |
Q |
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| T |
33269090 |
gatcctctgaatgattattacagtgacacttaatttttta-gaaactaatttagagattaaaaaacttaaa-gatgaatgtttttatcaaattaaaatgg |
33269187 |
T |
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| Q |
407 |
acttgttaacttgacatcgcacaaaaccgacatatagtttgcctaatgcttccgtcaaatgagctgtgctg |
477 |
Q |
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||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||| |
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| T |
33269188 |
acttgttaacttgacatcgtacaaaaccaacatatagttcgccttatgcttccgtcaaatgagctgtgctg |
33269258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 33268955 - 33269088
Alignment:
| Q |
95 |
ctccacaaaagtttatgaataaatcattagttttatcctccagagataaagtaatgacttatgtcacattggtcctttaaatatttatgccatcatattg |
194 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33268955 |
ctccacaaaagtttatgaataaatctttagttttatcctccagagatcaagttatgatttatgtcacattggtcctttaaatatttatgtcatcatattg |
33269054 |
T |
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| Q |
195 |
gtcccatgatttccaaattaattcttcaaacaat |
228 |
Q |
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| T |
33269055 |
ttcccatgatttccaaattcattcttcaaacaat |
33269088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 308 - 434
Target Start/End: Original strand, 33394704 - 33394830
Alignment:
| Q |
308 |
atccactgaatgattattatagtgacacttaatgttttaaggaactaatttagagattaaaaaacttaaaagattaatgtttttatgaaagtaatatgga |
407 |
Q |
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||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || || |
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| T |
33394704 |
atccactgaatgatttttgtagtgacacttcatgttttgaggaactaatttagagattaaaaaacttaaaagattaatgtttctatcaaagtaaaattga |
33394803 |
T |
|
| Q |
408 |
cttgttaacttgacatcgcacaaaacc |
434 |
Q |
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| T |
33394804 |
cctgttaacttgtgatcgtacaaaacc |
33394830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 445
Target Start/End: Original strand, 33290143 - 33290238
Alignment:
| Q |
352 |
ctaatttagaga-ttaaaaaacttaaaagattaatgtttttatgaaagtaatatggacttgttaacttgacatcgcacaaaaccg-acatatagtt |
445 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| || |||||||||| |
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| T |
33290143 |
ctaatttagagaattaaaaaactgaaaagattaatgtttttatgaaagtaaaatggacttgttaacttgtcatcgtacaaaatcgaacatatagtt |
33290238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 33394529 - 33394593
Alignment:
| Q |
95 |
ctccacaaaagtttatgaataaatcattagttttatcctccagagataaagtaatgacttatgtc |
159 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||| ||||| |||| |||| |||||||||||| |
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| T |
33394529 |
ctccccaaaagtttatgaataaataattagttttatgctccaaagatcaagttatgacttatgtc |
33394593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 434
Target Start/End: Original strand, 33292572 - 33292697
Alignment:
| Q |
308 |
atccactgaatgattattatagtgacacttaatgttttaaggaactaatttagagattaaaaaacttaaaagattaatg-tttttatgaaagtaatatgg |
406 |
Q |
| |
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||||| ||||| ||||||||||||||| || |||||| | |||||| |||||||||||||||||| | ||| ||||||| ||||| | |||||| |||| |
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| T |
33292572 |
atccattgaataattattatagtgacagttcatgtttga-ggaactgatttagagattaaaaaacgt-aaatattaatgttttttttttaagtaaaatgg |
33292669 |
T |
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| Q |
407 |
acttgttaacttgacatcgcacaaaacc |
434 |
Q |
| |
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| T |
33292670 |
atttgttaacttgtcctcgtacaaaacc |
33292697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 33394595 - 33394643
Alignment:
| Q |
198 |
ccatgatttccaaattaattcttcaaacaatactactgcaaaatttatc |
246 |
Q |
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||||||||||| |||| |||||||||||||| ||||| | ||||||||| |
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| T |
33394595 |
ccatgatttccgaattcattcttcaaacaatgctactaccaaatttatc |
33394643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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