View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_high_9 (Length: 432)

Name: NF2211_high_9
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_high_9
NF2211_high_9
[»] chr8 (4 HSPs)
chr8 (164-420)||(43615147-43615404)
chr8 (1-151)||(43614962-43615112)
chr8 (1-141)||(43626090-43626230)
chr8 (387-420)||(2250559-2250592)
[»] chr7 (4 HSPs)
chr7 (386-420)||(26403414-26403448)
chr7 (386-420)||(48643533-48643567)
chr7 (386-417)||(46963232-46963263)
chr7 (386-418)||(21814339-21814371)
[»] chr6 (3 HSPs)
chr6 (386-420)||(21862477-21862511)
chr6 (386-420)||(33424145-33424179)
chr6 (386-420)||(9290805-9290839)
[»] chr4 (2 HSPs)
chr4 (386-420)||(16871563-16871597)
chr4 (392-420)||(7258661-7258689)
[»] chr2 (1 HSPs)
chr2 (386-420)||(8986839-8986873)
[»] chr3 (3 HSPs)
chr3 (387-420)||(814552-814585)
chr3 (386-420)||(814172-814206)
chr3 (386-418)||(16462879-16462911)
[»] chr5 (1 HSPs)
chr5 (386-420)||(9512370-9512404)
[»] chr1 (3 HSPs)
chr1 (390-420)||(2071695-2071725)
chr1 (390-420)||(2075225-2075255)
chr1 (387-420)||(9167942-9167975)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 164 - 420
Target Start/End: Original strand, 43615147 - 43615404
Alignment:
Q  164 atatatatactactatgttgatattaaatgaattattttagacaagaaatttgaataagacttgataagaatcttaagcccgtaatcaacaacaaaacaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||| ||||||||||||||||||    
T  43615147 atatatatactactatgttgatattaaatgaattattttagacaaaaaatttggataattcttgataagaatcttaagcccataatcaacaacaaaacaa 43615246  T
Q  264 aaacataaaactatattggtaaatcgcaacttcaaagcaaaacttgatcctctatacaaatctttcaatgtcaaacatataaaaggtgtgcatgtacttg 363  Q
    ||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615247 aaacat----------tggtaaatcacaacttcaaagcaaaacttgatcctctatacaaatctttcaatgtcaaacatataaaaggtgtgcatgtacttg 43615336  T
Q  364 gagcatatccaactttcaaca-----------tgaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||| ||||           ||||||||||||||||||||||||||||||||||||    
T  43615337 gagcatatccaactttgaacatgaccattgtttgaactttatattatttagtatgtttttcgtatttt 43615404  T

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Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 43614962 - 43615112
Alignment:
Q  1 tgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaaggaaccaaagaagacattgatgttgctgtaaaggcagctcgttatgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43614962 tgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaaggaaccaaagaagacattgatgttgctgtaaaggcagctcgttatgcattt 43615061  T
Q  101 gactttggtccttggccccgcctgcctggtgctgtatgttatttttccttc 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43615062 gactttggtccttggccccgcctgcctggtgctgtatgttatttttccttc 43615112  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 43626090 - 43626230
Alignment:
Q  1 tgaaacaatagatccaagaacaggagaagttatagcaaggatcagcgaaggaaccaaagaagacattgatgttgctgtaaaggcagctcgttatgcattt 100  Q
    |||||||||||| |||||||||||||| || || ||||| || || |||||| | ||||||||||||||  |||| || || ||||| ||| | ||||||    
T  43626090 tgaaacaatagacccaagaacaggagatgtgattgcaagaataagtgaaggagcaaaagaagacattgaaattgcagttaaagcagcacgtgaagcattt 43626189  T
Q  101 gactttggtccttggccccgcctgcctggtgctgtatgtta 141  Q
    || |  ||||| ||||||||  || |||||| |||||||||    
T  43626190 gattcaggtccatggccccggatgtctggtgttgtatgtta 43626230  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 2250559 - 2250592
Alignment:
Q  387 aactttatattatttagtatgtttttcgtatttt 420  Q
    ||||||||||||||||||||||| ||||||||||    
T  2250559 aactttatattatttagtatgttgttcgtatttt 2250592  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 26403414 - 26403448
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  26403414 gaactttatattatttagtatgtttttcgtatttt 26403448  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 48643533 - 48643567
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  48643533 gaactttatattatttagtatgtttttcgtatttt 48643567  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 417
Target Start/End: Complemental strand, 46963263 - 46963232
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtat 417  Q
    ||||||||||||||||||||||||||||||||    
T  46963263 gaactttatattatttagtatgtttttcgtat 46963232  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 21814339 - 21814371
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatt 418  Q
    |||||||||||||||||||||||||||| ||||    
T  21814339 gaactttatattatttagtatgtttttcatatt 21814371  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 21862477 - 21862511
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  21862477 gaactttatattatttagtatgtttttcgtatttt 21862511  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 33424179 - 33424145
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  33424179 gaactttatattatttagtatgtttttcgtatttt 33424145  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Complemental strand, 9290839 - 9290805
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||| ||||||||||||    
T  9290839 gaactttatattatttagtatgcttttcgtatttt 9290805  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 16871563 - 16871597
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  16871563 gaactttatattatttagtatgtttttcgtatttt 16871597  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 420
Target Start/End: Complemental strand, 7258689 - 7258661
Alignment:
Q  392 tatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||    
T  7258689 tatattatttagtatgtttttcgtatttt 7258661  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 8986839 - 8986873
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||||||    
T  8986839 gaactttatattatttagtatgtttttcgtatttt 8986873  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 814585 - 814552
Alignment:
Q  387 aactttatattatttagtatgtttttcgtatttt 420  Q
    ||||||||||||||||||||||||||||||||||    
T  814585 aactttatattatttagtatgtttttcgtatttt 814552  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 814172 - 814206
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||| ||||||||||    
T  814172 gaactttatattatttagtatgttcttcgtatttt 814206  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 16462879 - 16462911
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatt 418  Q
    |||||||||||||||||||||||||||| ||||    
T  16462879 gaactttatattatttagtatgtttttcatatt 16462911  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 420
Target Start/End: Original strand, 9512370 - 9512404
Alignment:
Q  386 gaactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||| ||||||    
T  9512370 gaactttatattatttagtatgtttttcatatttt 9512404  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 420
Target Start/End: Complemental strand, 2071725 - 2071695
Alignment:
Q  390 tttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||    
T  2071725 tttatattatttagtatgtttttcgtatttt 2071695  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 420
Target Start/End: Complemental strand, 2075255 - 2075225
Alignment:
Q  390 tttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||||||||||||||||    
T  2075255 tttatattatttagtatgtttttcgtatttt 2075225  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 9167975 - 9167942
Alignment:
Q  387 aactttatattatttagtatgtttttcgtatttt 420  Q
    |||||||||||||||||| |||||||||||||||    
T  9167975 aactttatattatttagtttgtttttcgtatttt 9167942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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