View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_11 (Length: 408)
Name: NF2211_low_11
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 57 - 277
Target Start/End: Original strand, 5023036 - 5023257
Alignment:
| Q |
57 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagacnnnnnnnn-gtgttttagtttcatgtag |
155 |
Q |
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| T |
5023036 |
ataggacagtagacttccatctccatcagccaacatatatatattgaaactattacaatattcattatagactttttttttgtgttttaggttcatgtag |
5023135 |
T |
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| Q |
156 |
gttgtgaaatgaacataatctaattctattgcaatgttgtttgaacagtatcaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
255 |
Q |
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| T |
5023136 |
gttgtgaaatgaacataatctaatgctattgcaatgttgtttgaacagtagaaagggctatggtcctacaatgatactttctttccacactcttgtgctt |
5023235 |
T |
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| Q |
256 |
aacgttgattgaattttactct |
277 |
Q |
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|||||||||||||||||||||| |
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| T |
5023236 |
aacgttgattgaattttactct |
5023257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 304 - 391
Target Start/End: Original strand, 5023251 - 5023338
Alignment:
| Q |
304 |
ttactcttaaggtctgtttggagtttagaaggggaggacttcagaaaaaatgaagtggaatgaatggatgctttctttagttgggaag |
391 |
Q |
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| T |
5023251 |
ttactctgaaggtctgtttggagtttagaaggggaggacttcagaaaaaatgaagtggaatgaatgaatgctttctttagttgggaag |
5023338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 5022588 - 5022639
Alignment:
| Q |
9 |
attattcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
60 |
Q |
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| T |
5022588 |
attattcttagattagaaaaccaattaaaggaaaatgtaacttgaaacatag |
5022639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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