View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_low_13 (Length: 397)

Name: NF2211_low_13
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_low_13
NF2211_low_13
[»] chr4 (2 HSPs)
chr4 (11-385)||(42393771-42394145)
chr4 (117-384)||(42377959-42378229)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 42393771 - 42394145
Alignment:
Q  11 gccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaataaaccatatgccgcnnnnnnnngtgagaagacgctaaacataa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||        |||||||||||||||||||||    
T  42393771 gccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaaaagtgagaagacgctaaacataa 42393870  T
Q  111 atgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42393871 atgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactg 42393970  T
Q  211 caaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaaga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42393971 caaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaaga 42394070  T
Q  311 ttcatatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccct 385  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||       || ||||||||||||||||||    
T  42394071 ttcatatctttcacaataccctgcaaatcaaaccgagccagcgcaggaaaaaaatctgacaagttcggcttccct 42394145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 117 - 384
Target Start/End: Original strand, 42377959 - 42378229
Alignment:
Q  117 aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaa 216  Q
    |||||| ||||||||||| ||| |||||||| || || ||  |||| || |||||||| |||||||| |||||||||||||||||||||||||||| |||    
T  42377959 aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaa 42378058  T
Q  217 atccttactttcact---ctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggcaccaaaagattc 313  Q
     ||| ||||  || |   |||||| || ||  | ||||||  || |||||||||||||||||| |||||||| |||||||| ||||||||||||  ||||    
T  42378059 gtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggcaccaaagcattc 42378158  T
Q  314 atatctttcacaataccctgcaaatcaaaccgagccaacgcaggnnnnnnntccgacaagttcggcttccc 384  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||       |||||||| |||||||||||    
T  42378159 atatctttcacaacaccctgcaaatcaaaccgggccaacccaggaaaaaaatccgacaaattcggcttccc 42378229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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