View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_18 (Length: 358)
Name: NF2211_low_18
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 17109390 - 17109722
Alignment:
| Q |
16 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109390 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
17109489 |
T |
|
| Q |
116 |
tgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttat |
215 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17109490 |
tgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttat |
17109589 |
T |
|
| Q |
216 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109590 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
17109689 |
T |
|
| Q |
316 |
ccttctccgctagaggtttgccttcaagtataa |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
17109690 |
ccttctccgctagaggtttgccttcaagtataa |
17109722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 16978057 - 16978385
Alignment:
| Q |
15 |
agctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaa |
114 |
Q |
| |
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||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||| |
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| T |
16978057 |
agctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaa |
16978156 |
T |
|
| Q |
115 |
atgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagtttta |
214 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| | |
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| T |
16978157 |
atgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttga |
16978256 |
T |
|
| Q |
215 |
tctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtg |
314 |
Q |
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| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| |||| | |
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| T |
16978257 |
tatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggag |
16978356 |
T |
|
| Q |
315 |
tccttctccgctagaggtttgccttcaag |
343 |
Q |
| |
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|| ||||||| | |||||||||| ||||| |
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| T |
16978357 |
tcgttctccgatggaggtttgccatcaag |
16978385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 17029929 - 17030257
Alignment:
| Q |
15 |
agctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaa |
114 |
Q |
| |
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||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||| |
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| T |
17029929 |
agctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaa |
17030028 |
T |
|
| Q |
115 |
atgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagtttta |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| | |
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|
| T |
17030029 |
atgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttga |
17030128 |
T |
|
| Q |
215 |
tctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtg |
314 |
Q |
| |
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| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| | |
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| T |
17030129 |
tatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggag |
17030228 |
T |
|
| Q |
315 |
tccttctccgctagaggtttgccttcaag |
343 |
Q |
| |
|
|| ||||||| | |||||||||| ||||| |
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| T |
17030229 |
tcgttctccgatggaggtttgccatcaag |
17030257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 17048267 - 17048595
Alignment:
| Q |
15 |
agctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaa |
114 |
Q |
| |
|
||||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| ||||||||||||||||||| |
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| T |
17048267 |
agctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaa |
17048366 |
T |
|
| Q |
115 |
atgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagtttta |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| | |
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|
| T |
17048367 |
atgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttga |
17048466 |
T |
|
| Q |
215 |
tctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtg |
314 |
Q |
| |
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| |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| | |
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| T |
17048467 |
tatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggag |
17048566 |
T |
|
| Q |
315 |
tccttctccgctagaggtttgccttcaag |
343 |
Q |
| |
|
|| ||||||| | |||||||||| ||||| |
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| T |
17048567 |
tcgttctccgatggaggtttgccatcaag |
17048595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
75 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
146 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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|
| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
234 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
75 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
146 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
234 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
75 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
146 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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|
| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
234 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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