View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_19 (Length: 351)
Name: NF2211_low_19
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 10085553 - 10085407
Alignment:
| Q |
188 |
attaaggtaaggctgacaaatcctttgctttagacccaccaacaaaaaatcatgtttcattaactttttaatcaaaaatacctcatatacagatacaaag |
287 |
Q |
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| T |
10085553 |
attaaggtaaggctaacaaatcctttgctttagacccaccaacaaaaaatcatgtttcattaattttttaatcaaaaatacctcatatacagatacaaag |
10085454 |
T |
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| Q |
288 |
atattgtatattaaaatttgatttagctttcattgaatattgaaaat |
334 |
Q |
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| T |
10085453 |
agattgtatattaaaatttgatttagctttcattgaatattgaaaat |
10085407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 10085618 - 10085549
Alignment:
| Q |
14 |
atcatctaattattaccatgtacataacttttaaaatcattatatttttagaatgatacaattgcattaa |
83 |
Q |
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| T |
10085618 |
atcatctaattattaccatttacataacttttaaaatcattatatttttagaatgatacaattgcattaa |
10085549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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