View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_2 (Length: 821)
Name: NF2211_low_2
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 1 - 806
Target Start/End: Original strand, 7163077 - 7163880
Alignment:
| Q |
1 |
tgtttatggttgctttaaaaatattgtagcgagtgataaagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagagagtattcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7163077 |
tgtttatggttgctttaaaaatattgtagcgagtgataaagaaaagaataccgagcagggtgttggttttgtgaattctctttgtgtagagagtattcat |
7163176 |
T |
|
| Q |
101 |
actcaagtttgggagagttgttttatcctaatgacgacaaggcaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7163177 |
actcaagtttgggagagttgttttatcctaatgacgacaaggtaagaaagaattgctgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgac |
7163276 |
T |
|
| Q |
201 |
ttagtccacgactcagattcaaattttttatctaacaaattacttatgttgaactttgannnnnnngtaaatataatttcaagtcttcgatagatgcaac |
300 |
Q |
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||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7163277 |
ttagtccacgactcagactcaaattttttatctaataa--tacttatgttcaactttgatttttttgtaaatataatttcaagtcttcgatagatgcaac |
7163374 |
T |
|
| Q |
301 |
aacaatttcaagagtttaagaattgttccaacaatttgtcatctcaactgaataatagtggtggaattcaaaaattgatgcatcaaatctagttgaacat |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
7163375 |
aacaatttcaagagtttaagaattgttccaacagtttgtcatcacaactgaataatagtggtggaatttataaattgatgcatcaaatctagttgaacat |
7163474 |
T |
|
| Q |
401 |
tcatccaattttaacaagcattgaccatatcattatatgcaccattgcagacaccaaaatttaatcaccatttcacacttttagtttggcacttctctca |
500 |
Q |
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| T |
7163475 |
tcatccaattttaacaagcattaactatatcattatatgcaccattgcagacaccaaaatttaatcaccatttcacacttttagtttggcacttctctca |
7163574 |
T |
|
| Q |
501 |
tctatcacatttcgataagcttctcttgttttttggtatgctacactttaaaccctatatccaataataacgagtttcattggcatccacctcttacaca |
600 |
Q |
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|
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| T |
7163575 |
tctatcacatttcgataagcttctcttgttttttggtatgctacactttaaaccctatatccaataataacgagtttcattggcatccacctcttacaca |
7163674 |
T |
|
| Q |
601 |
caataattgcatcacagttgaagacatataaaatcttctaagaggtatttaacgagtgtaactcaaatttactccttaattttattgacgaggatattga |
700 |
Q |
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| T |
7163675 |
caataattgcatcacagttgaagacatataaaatcttctaagaggtatttaacgagtgtaactcaaatttactccttaattttattgacgaggatattga |
7163774 |
T |
|
| Q |
701 |
taatcaaatctaagatcctaatatgattaaatatgatattataggaagtggatatgacatattgcgaagcgagttgttttcattgcttgttattgatgct |
800 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7163775 |
taatcaaatctaagatcctaatatgattaaatatgatattatatgaagaggatatgacatattgcgaagcgagttgttttcattgattgttattgatgct |
7163874 |
T |
|
| Q |
801 |
atacat |
806 |
Q |
| |
|
|||||| |
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| T |
7163875 |
atacat |
7163880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 12703800 - 12703866
Alignment:
| Q |
60 |
gtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttat |
126 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| |||||||| || |||||||||| |
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| T |
12703800 |
gtgttggtttggtgaattctctttgtgcagagagtattcatacttaagtttggaagggttgttttat |
12703866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 48517825 - 48517666
Alignment:
| Q |
57 |
agggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttgggagagttgttttatcctaatgacgacaaggcaagaaagaattgc |
156 |
Q |
| |
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||||||||||||| | || || |||||||| | |||||| ||||||| ||||||| || | ||||||||||| |||||| |||||||||||| || |
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| T |
48517825 |
agggtgttggtttggagagttttctttgtgcaaagagtagtcatacttaagtttgaaagggctgttttatcctggggacgacgaggcaagaaagatctgt |
48517726 |
T |
|
| Q |
157 |
tgcaccgttaaggtagagtgacaaaacgtcttaaaaagagtgacttagtccacgactcag |
216 |
Q |
| |
|
||||| || ||| |||| || ||||||||||| |||| ||| |||||| |||||||| |
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| T |
48517725 |
tgcacaattcaggcagagccgcagaacgtcttaaagagagcgacctagtccgcgactcag |
48517666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 4115702 - 4115763
Alignment:
| Q |
273 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaacaa |
334 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| ||| | ||||| |||||||| |
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|
| T |
4115702 |
ataatttcaattgttcgatagatgcaacaacaatttcaagtgttcgaaaattgctccaacaa |
4115763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 19488921 - 19488985
Alignment:
| Q |
273 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaacaattt |
337 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||| || ||| ||||| |||| ||||||||| |
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| T |
19488921 |
ataatttcaagtgttcgacagatgcaacaacaatttttagtgttcaagaaatgtttcaacaattt |
19488985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 14918423 - 14918363
Alignment:
| Q |
273 |
ataatttcaagtcttcgatagatgcaacaacaatttcaagagtttaagaattgttccaaca |
333 |
Q |
| |
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|||||| ||||| ||||||||||||| ||||||||| ||| ||| ||||| |||||||||| |
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|
| T |
14918423 |
ataattccaagtgttcgatagatgcagcaacaatttaaagtgttcaagaaatgttccaaca |
14918363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 37075569 - 37075516
Alignment:
| Q |
58 |
gggtgttggttttgtgaattctctttgtgtagagagtattcatactcaagtttg |
111 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | |||||| ||||||| ||||||| |
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|
| T |
37075569 |
gggtgttggtttggtgagttctctttgtgcatagagtactcatacttaagtttg |
37075516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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