View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_20 (Length: 343)
Name: NF2211_low_20
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 37421634 - 37421276
Alignment:
| Q |
4 |
tcatgttgtgaaagcgtaatgcccaccaaaaccgagaccaagttgtcatcaaactccta-------------------acttctattccaacttaagttc |
84 |
Q |
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| T |
37421634 |
tcatgttgccaaagcgtaatgcccaccaaaaccgagaccaagttgtcatcaaactcctactcccaaacaaacaaacaaacttctactccaacttaagttc |
37421535 |
T |
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| Q |
85 |
taccccagctcatcctctacccaatttcccatattcctaaccaaaaagctggaaaagggtgcgaaaaacagactctcaaggaaacctcacccatccacga |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37421534 |
taccccagctcatcctctacccaatttcccatattcctaaccaaaaaactggaaaagggtgcgaaaaacagactctcaaggaaacctcacccatccacga |
37421435 |
T |
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| Q |
185 |
aacactctaaaagaatatagaaaacccattacatatcaccctagtcgttccctttgagagccaaccaccaacaagatttggacgaaaccaaagcagcaag |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37421434 |
aacactctaaaagaatatagaaaacccattacatatcaccctagtcactccctttgagagccaaccaccaacaagatttggacgaaaccaaagcagcaag |
37421335 |
T |
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| Q |
285 |
atccatttccaccaagaagaaactgaccggaacccccaccaccacagacacagacgaac |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37421334 |
atccatttccaccaagaagaaactgaccggaacccccaccaccacagacacagacgaac |
37421276 |
T |
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