View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_low_23 (Length: 334)

Name: NF2211_low_23
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_low_23
NF2211_low_23
[»] chr7 (21 HSPs)
chr7 (1-320)||(36939844-36940163)
chr7 (1-56)||(1085727-1085782)
chr7 (1-56)||(7554017-7554072)
chr7 (1-56)||(23488-23543)
chr7 (1-56)||(7517572-7517627)
chr7 (2-41)||(36622967-36623006)
chr7 (1-42)||(11845197-11845238)
chr7 (1-41)||(29157572-29157612)
chr7 (1-41)||(30244277-30244317)
chr7 (1-41)||(37533121-37533161)
chr7 (1-41)||(41910705-41910745)
chr7 (1-41)||(47129102-47129142)
chr7 (1-56)||(30244693-30244748)
chr7 (1-56)||(30245486-30245541)
chr7 (1-56)||(30255331-30255386)
chr7 (1-38)||(14681520-14681557)
chr7 (4-41)||(20599321-20599358)
chr7 (1-38)||(45434646-45434683)
chr7 (1-41)||(22566773-22566813)
chr7 (4-40)||(24177443-24177479)
chr7 (1-41)||(30245084-30245124)
[»] chr3 (26 HSPs)
chr3 (1-55)||(33803363-33803417)
chr3 (1-41)||(22304253-22304293)
chr3 (1-56)||(25739536-25739591)
chr3 (1-56)||(43346642-43346697)
chr3 (1-42)||(3135184-3135225)
chr3 (1-41)||(22304576-22304616)
chr3 (1-41)||(35946529-35946569)
chr3 (1-41)||(39389077-39389117)
chr3 (1-41)||(43346902-43346942)
chr3 (5-41)||(50612567-50612603)
chr3 (1-41)||(52634683-52634723)
chr3 (4-55)||(8327897-8327948)
chr3 (2-41)||(11661542-11661581)
chr3 (1-56)||(31190009-31190064)
chr3 (1-56)||(53577356-53577411)
chr3 (1-56)||(54017927-54017982)
chr3 (3-41)||(22304061-22304099)
chr3 (2-56)||(29645014-29645068)
chr3 (2-56)||(42342500-42342554)
chr3 (1-63)||(53118085-53118147)
chr3 (1-41)||(15772861-15772901)
chr3 (1-41)||(29644692-29644732)
chr3 (1-41)||(37726511-37726551)
chr3 (1-41)||(37990750-37990790)
chr3 (1-41)||(37991088-37991128)
chr3 (1-41)||(51886568-51886608)
[»] chr5 (25 HSPs)
chr5 (1-56)||(12662763-12662818)
chr5 (1-56)||(11417088-11417141)
chr5 (1-41)||(32487401-32487441)
chr5 (1-41)||(41170641-41170681)
chr5 (1-56)||(15370091-15370146)
chr5 (1-55)||(13415871-13415925)
chr5 (1-41)||(299496-299536)
chr5 (1-41)||(18603231-18603271)
chr5 (1-41)||(26074893-26074933)
chr5 (1-41)||(36492328-36492368)
chr5 (1-41)||(40296426-40296466)
chr5 (1-41)||(42405707-42405747)
chr5 (2-41)||(27502148-27502187)
chr5 (1-35)||(3295126-3295160)
chr5 (1-55)||(26074257-26074311)
chr5 (2-36)||(33747783-33747817)
chr5 (1-41)||(623825-623865)
chr5 (1-41)||(624203-624243)
chr5 (1-41)||(5723902-5723942)
chr5 (1-41)||(6224203-6224243)
chr5 (1-41)||(6500458-6500497)
chr5 (1-41)||(6500830-6500869)
chr5 (13-41)||(13785732-13785760)
chr5 (1-41)||(26074619-26074659)
chr5 (1-41)||(35150014-35150054)
[»] chr4 (30 HSPs)
chr4 (1-56)||(52884879-52884934)
chr4 (1-55)||(52884688-52884742)
chr4 (1-41)||(41370364-41370404)
chr4 (1-56)||(25483328-25483383)
chr4 (1-38)||(50788092-50788129)
chr4 (1-38)||(54343110-54343147)
chr4 (1-41)||(20826224-20826264)
chr4 (1-41)||(41707573-41707613)
chr4 (1-41)||(50630864-50630904)
chr4 (1-56)||(1731756-1731811)
chr4 (1-56)||(4955426-4955481)
chr4 (1-56)||(10245912-10245967)
chr4 (1-40)||(19504713-19504752)
chr4 (1-40)||(44620304-44620343)
chr4 (1-56)||(49076557-49076612)
chr4 (1-55)||(2740693-2740747)
chr4 (2-56)||(3341120-3341174)
chr4 (1-54)||(44620654-44620707)
chr4 (1-41)||(2741078-2741118)
chr4 (1-41)||(6975565-6975605)
chr4 (1-37)||(10246358-10246394)
chr4 (1-41)||(16888925-16888965)
chr4 (1-41)||(16889645-16889685)
chr4 (1-41)||(20825843-20825883)
chr4 (1-41)||(34646758-34646798)
chr4 (1-41)||(49880167-49880207)
chr4 (1-41)||(50002433-50002473)
chr4 (1-41)||(54017704-54017744)
chr4 (1-33)||(54108928-54108960)
chr4 (1-41)||(55933233-55933273)
[»] chr2 (22 HSPs)
chr2 (1-56)||(31468857-31468912)
chr2 (1-56)||(36785674-36785729)
chr2 (1-41)||(36178716-36178756)
chr2 (1-41)||(37106195-37106235)
chr2 (1-41)||(41283586-41283626)
chr2 (1-56)||(16542441-16542496)
chr2 (2-56)||(29676895-29676949)
chr2 (2-55)||(37632709-37632762)
chr2 (1-41)||(5542736-5542776)
chr2 (1-41)||(5543109-5543149)
chr2 (1-41)||(6421392-6421432)
chr2 (1-41)||(14745778-14745818)
chr2 (1-41)||(37105931-37105971)
chr2 (1-56)||(38796329-38796384)
chr2 (3-41)||(36178382-36178420)
chr2 (1-38)||(6421314-6421351)
chr2 (1-41)||(962605-962645)
chr2 (1-41)||(7598616-7598656)
chr2 (1-41)||(14745405-14745445)
chr2 (1-56)||(15511606-15511659)
chr2 (1-41)||(15880270-15880310)
chr2 (1-41)||(31899537-31899577)
[»] chr8 (29 HSPs)
chr8 (1-42)||(41416282-41416323)
chr8 (1-41)||(3038401-3038441)
chr8 (1-41)||(6731911-6731951)
chr8 (2-41)||(3670067-3670106)
chr8 (2-41)||(45123013-45123052)
chr8 (1-42)||(6651509-6651550)
chr8 (1-42)||(18371767-18371808)
chr8 (4-41)||(18372485-18372522)
chr8 (1-41)||(147458-147498)
chr8 (1-41)||(3669694-3669734)
chr8 (1-41)||(18372367-18372407)
chr8 (1-41)||(18372810-18372850)
chr8 (1-41)||(30441088-30441128)
chr8 (1-41)||(34835216-34835256)
chr8 (1-41)||(45122021-45122061)
chr8 (1-41)||(45122168-45122208)
chr8 (1-56)||(9309347-9309402)
chr8 (1-40)||(33113478-33113517)
chr8 (2-41)||(34834883-34834922)
chr8 (1-55)||(9608738-9608792)
chr8 (1-55)||(41972151-41972205)
chr8 (1-42)||(70385-70426)
chr8 (1-38)||(25561755-25561792)
chr8 (1-41)||(1013982-1014022)
chr8 (1-56)||(6876973-6877029)
chr8 (1-41)||(18373042-18373082)
chr8 (1-41)||(18380128-18380168)
chr8 (1-41)||(25561927-25561967)
chr8 (1-41)||(37544601-37544641)
[»] scaffold0702 (2 HSPs)
scaffold0702 (1-41)||(253-293)
scaffold0702 (1-41)||(625-665)
[»] chr6 (17 HSPs)
chr6 (1-41)||(2378133-2378173)
chr6 (1-41)||(9062460-9062500)
chr6 (1-41)||(14748449-14748489)
chr6 (1-41)||(26544056-26544096)
chr6 (1-41)||(29518510-29518550)
chr6 (1-41)||(29518927-29518967)
chr6 (1-41)||(32741186-32741226)
chr6 (1-56)||(2579983-2580038)
chr6 (1-38)||(3058236-3058273)
chr6 (1-41)||(1950296-1950336)
chr6 (1-41)||(3409266-3409306)
chr6 (1-41)||(32460691-32460731)
chr6 (1-41)||(35210211-35210251)
chr6 (1-41)||(593820-593860)
chr6 (1-41)||(1127367-1127407)
chr6 (1-41)||(2377761-2377801)
chr6 (1-41)||(3415465-3415505)
[»] chr1 (27 HSPs)
chr1 (1-41)||(3537258-3537298)
chr1 (1-41)||(44290569-44290609)
chr1 (1-41)||(44290936-44290976)
chr1 (1-41)||(50052134-50052174)
chr1 (1-56)||(34364499-34364554)
chr1 (1-56)||(41184536-41184591)
chr1 (1-38)||(3537710-3537747)
chr1 (1-41)||(3550727-3550767)
chr1 (1-41)||(17294584-17294624)
chr1 (1-41)||(34649445-34649485)
chr1 (1-41)||(40082414-40082454)
chr1 (1-41)||(41142379-41142419)
chr1 (1-56)||(3875442-3875497)
chr1 (1-56)||(34364917-34364972)
chr1 (1-56)||(35154150-35154205)
chr1 (1-36)||(45494089-45494124)
chr1 (9-55)||(4878796-4878842)
chr1 (1-55)||(24600425-24600479)
chr1 (1-41)||(37556118-37556159)
chr1 (2-55)||(44685449-44685502)
chr1 (1-41)||(26661633-26661673)
chr1 (1-41)||(29798206-29798246)
chr1 (1-41)||(32594827-32594867)
chr1 (1-41)||(37555737-37555777)
chr1 (1-41)||(41759490-41759530)
chr1 (1-41)||(45084389-45084429)
chr1 (1-41)||(48588599-48588639)
[»] scaffold0734 (2 HSPs)
scaffold0734 (1-56)||(5388-5443)
scaffold0734 (1-56)||(5769-5824)
[»] scaffold0391 (2 HSPs)
scaffold0391 (1-56)||(3096-3151)
scaffold0391 (1-41)||(1217-1257)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-56)||(17567-17622)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 36939844 - 36940163
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaagatattcgaattctgacttatagatatatctacattgtgtgtga 100  Q
    |||| ||||||||||||| ||||||||||||||||||||||   |||||| |||||  |||||||||| ||||||||||||||||||||||||||||| |    
T  36939844 caacttttactattttatacgatttgggacatataactcacacttgcacagaacaacgtattcgaattatgacttatagatatatctacattgtgtgtta 36939943  T
Q  101 tataccttcaatagtggagagaagctatggaaaacaaacaaataaattattcatttcaaaagtattgaatttgtagctattgggttccagatgtcagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36939944 tataccttcaatagtggagagaagctatggaaaacaaacaaataaattattcatttcaaaagtattgaatttgtagctattgggttccagatgtcagttt 36940043  T
Q  201 ttgttaaactaaaatatttctgtgtgcaactaaaaaggctaataattagaagtaactatttccattaagaggttaacttctcccgaaagatttgtctcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36940044 ttgttaaactaaaatatttctgtgtgcaactaaaaaggctaataattagaagtaactatttccattaagaggttaacttctcccgaaagatttgtctcca 36940143  T
Q  301 tacactagattagtaaattt 320  Q
    ||||||||||||||||||||    
T  36940144 tacactagattagtaaattt 36940163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1085727 - 1085782
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  1085727 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 1085782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7554072 - 7554017
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  7554072 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 7554017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23488 - 23543
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||||||| |||||||| ||| ||||||||||||| | ||||||||||||    
T  23488 caacctttactattgtatccgatgtggaacatataactcacaattgcacacaacaa 23543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7517627 - 7517572
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  7517627 caacctttactcttttatccgatgtgggacatataactcacacttgcacacaacaa 7517572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 36623006 - 36622967
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  36623006 aacctttactattttatccgatgtgggacatataactcac 36622967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11845238 - 11845197
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  11845238 caacctttactattttatccgatgtggaacatataactcact 11845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29157612 - 29157572
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  29157612 caacctttactattttatccggtgtgggacatataactcac 29157572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30244317 - 30244277
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  30244317 caacctttactcttttatccgatgtgggacatataactcac 30244277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37533121 - 37533161
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  37533121 caacctttactattttatccaatgtgggacatataactcac 37533161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41910705 - 41910745
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  41910705 caacctttactcttttatccgatgtgggacatataactcac 41910745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47129142 - 47129102
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  47129142 caacctttactattttatccgatgtgagacatataactcac 47129102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30244748 - 30244693
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| |||||||| || |||||||||||||||||   ||||||||||||    
T  30244748 caacctttactcttttatccaatgtgggacatataactcacacttgcacacaacaa 30244693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30245541 - 30245486
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||| ||| |||||||||||||||||   ||||||||||||    
T  30245541 caacctttactcttttatctgatgtgggacatataactcacacttgcacacaacaa 30245486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30255386 - 30255331
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| ||||||||||||| |||   ||||||||||||    
T  30255386 caacctttactcttttatccgatgtgggacatataacgcacacttgcacacaacaa 30255331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14681557 - 14681520
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  14681557 caacctttactattttatctgatgtgggacatataact 14681520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 20599358 - 20599321
Alignment:
Q  4 cctttactattttatccgatttgggacatataactcac 41  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  20599358 cctttacttttttatccgatatgggacatataactcac 20599321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45434683 - 45434646
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  45434683 caacctttacttttttatccgatgtgggacatataact 45434646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22566773 - 22566813
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||| ||||||    
T  22566773 caacctttactcttttatccgatgtgggacatattactcac 22566813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 24177479 - 24177443
Alignment:
Q  4 cctttactattttatccgatttgggacatataactca 40  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  24177479 cctttactcttttatccgatgtgggacatataactca 24177443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30245124 - 30245084
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  30245124 caacctttactcttttatccgatgtggaacatataactcac 30245084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33803363 - 33803417
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  33803363 caacctttactattttatccgatgtgggacatataactcacaattgcacacaaca 33803417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22304293 - 22304253
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  22304293 caacctttactattttatccgatgtgggacatataactcac 22304253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25739536 - 25739591
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||| |||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  25739536 caacttttactattttatccgatgtgggacatataactcacacttgcacacaacaa 25739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43346697 - 43346642
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| ||||||||| |||||||   ||||||||||||    
T  43346697 caacctttactattttatccgatgtgggacatacaactcacacttgcacacaacaa 43346642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3135184 - 3135225
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  3135184 caacatttactattttatccgatgtgggacatataactcact 3135225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22304616 - 22304576
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  22304616 caacctttactattttatccgatgtgggacatatagctcac 22304576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35946569 - 35946529
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  35946569 caacctttactgttttatccgatgtgggacatataactcac 35946529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39389117 - 39389077
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39389117 caacctttactattttatccgatgtaggacatataactcac 39389077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43346902 - 43346942
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  43346902 caacctttactattttatctgatgtgggacatataactcac 43346942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 50612567 - 50612603
Alignment:
Q  5 ctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  50612567 ctttactattttatccgatgtgggacatataactcac 50612603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 52634723 - 52634683
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  52634723 caacctttactgttttatccgatgtgggacatataactcac 52634683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 8327948 - 8327897
Alignment:
Q  4 cctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    |||||||| ||||||||||| |||||||||||||||||   |||||||||||    
T  8327948 cctttactcttttatccgatgtgggacatataactcacacttgcacacaaca 8327897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 11661581 - 11661542
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  11661581 aaccgttactattttatccgatgtgggacatataactcac 11661542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31190064 - 31190009
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||||||||| ||||||   ||||||||||||    
T  31190064 caacctttactcttttatccgatgtgggacatatcactcacacttgcacacaacaa 31190009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 53577411 - 53577356
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| || ||||||||||||||   ||||||||||||    
T  53577411 caacctttactgttttatccgatgtgtgacatataactcacacttgcacacaacaa 53577356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54017927 - 54017982
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| | |||||||||||||||   ||||||||||||    
T  54017927 caacctttactcttttatccgatgtaggacatataactcacacttgcacacaacaa 54017982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 22304061 - 22304099
Alignment:
Q  3 acctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  22304061 acctttactattttatctgatgtgggacatataactcac 22304099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 29645014 - 29645068
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||| ||||||||||| |||||||||||||| ||   ||||||||||||    
T  29645014 aacctttactcttttatccgatgtgggacatataacttacacttgcacacaacaa 29645068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 42342500 - 42342554
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||| ||||||| ||| |||||||||||||||||   ||||||||||||    
T  42342500 aacctttactcttttatcggatgtgggacatataactcacacttgcacacaacaa 42342554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 53118085 - 53118147
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaagatattc 63  Q
    ||||||||||| ||||||||||| ||| |||||||||||||   ||| |||||||| ||||||    
T  53118085 caacctttactcttttatccgatatggaacatataactcacacttgcccacaacaacatattc 53118147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15772901 - 15772861
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  15772901 caacatttactcttttatccgatatgggacatataactcac 15772861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29644692 - 29644732
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  29644692 caacctttactctttaatccgatgtgggacatataactcac 29644732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37726551 - 37726511
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| || ||||||||||||||    
T  37726551 caacatttactattttatccgatgtgagacatataactcac 37726511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37990750 - 37990790
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  37990750 caacatttactattttatccgatgtggaacatataactcac 37990790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37991088 - 37991128
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  37991088 caacctttactattttatccaatgtgagacatataactcac 37991128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 51886608 - 51886568
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| || ||||||||||||||    
T  51886608 caacctttactattttattcgatgtgagacatataactcac 51886568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12662763 - 12662818
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  12662763 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 12662818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11417088 - 11417141
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| ||| ||||||||||||||  ||||||||||||    
T  11417088 caacctttactattttatccgatgtggaacatataactcact--tgcacacaacaa 11417141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32487441 - 32487401
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  32487441 caacctttactattttatccgatgtgggacatataactcac 32487401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41170681 - 41170641
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  41170681 caacctttactattttatccgatgtgggacatataactcac 41170641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15370146 - 15370091
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||||||||||| |||| |||||||||||||||||   ||||||||||||    
T  15370146 caacctttactattttattcgatgtgggacatataactcacacttgcacacaacaa 15370091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13415871 - 13415925
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    |||||||||||| |||||||||| |||||||||||||||||   |||||||||||    
T  13415871 caacctttactaatttatccgatgtgggacatataactcacacttgcacacaaca 13415925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 299536 - 299496
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  299536 caacctttactgttttatccgatgtgggacatataactcac 299496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18603231 - 18603271
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  18603231 caacctttactattttatctgatgtgggacatataactcac 18603271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26074893 - 26074933
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  26074893 caacctttactcttttatccgatgtgggacatataactcac 26074933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36492328 - 36492368
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  36492328 caacctttactcttttatccgatgtgggacatataactcac 36492368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40296426 - 40296466
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  40296426 caaccttttctattttatccgatgtgggacatataactcac 40296466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42405707 - 42405747
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42405707 caacctttactattttatccgatgttggacatataactcac 42405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 27502148 - 27502187
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  27502148 aacctttactattttatccaatgtgggacatataactcac 27502187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3295126 - 3295160
Alignment:
Q  1 caacctttactattttatccgatttgggacatata 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  3295126 caacctttactattttatccgatgtgggacatata 3295160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26074257 - 26074311
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||| ||||||||||| || ||||||||||||||   |||||||||||    
T  26074257 caacctttacttttttatccgatgtgtgacatataactcacacttgcacacaaca 26074311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 33747817 - 33747783
Alignment:
Q  2 aacctttactattttatccgatttgggacatataa 36  Q
    |||||||||||||||||||||| ||||||||||||    
T  33747817 aacctttactattttatccgatgtgggacatataa 33747783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 623865 - 623825
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  623865 caacctttactattatatccgatgtgagacatataactcac 623825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 624243 - 624203
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  624243 caacctttactattttatacaatgtgggacatataactcac 624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5723902 - 5723942
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||| ||||||||||||| |||||||||||||||||    
T  5723902 caacttttattattttatccgatgtgggacatataactcac 5723942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6224243 - 6224203
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||  |||||||||||||||||    
T  6224243 caacctttactcttttatccgaagtgggacatataactcac 6224203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6500497 - 6500458
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6500497 caacctttactattttatccgatgt-ggacatataactcac 6500458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6500869 - 6500830
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6500869 caacctttactattttatccgatgt-ggacatataactcac 6500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 13785732 - 13785760
Alignment:
Q  13 ttttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||||||||||||    
T  13785732 ttttatccgatttgggacatataactcac 13785760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26074659 - 26074619
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  26074659 caacctttactcttttatccgatatggaacatataactcac 26074619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35150054 - 35150014
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||| ||| ||||||||||| |||||||||||||||||    
T  35150054 caaccttgactcttttatccgatgtgggacatataactcac 35150014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52884934 - 52884879
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  52884934 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 52884879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 52884742 - 52884688
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||||||||||||||| |||||||||||||||||   |||||||||||    
T  52884742 caacctttactattttatccgatgtgggacatataactcacacttgcacacaaca 52884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41370404 - 41370364
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  41370404 caacatttactattttatccgatttgggacatataactcac 41370364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25483383 - 25483328
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| || ||||||||||||||   ||||||||||||    
T  25483383 caacctttactattttatccgatgtgagacatataactcacacttgcacacaacaa 25483328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50788092 - 50788129
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  50788092 caacctttactattttatccgatgtgggacatataact 50788129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54343110 - 54343147
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  54343110 caacctttactattttatccgatgtgggacatataact 54343147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20826264 - 20826224
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  20826264 caacttttactattttatccgatgtgggacatataactcac 20826224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41707573 - 41707613
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  41707573 caacctttactcttttatccgatgtgggacatataactcac 41707613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50630864 - 50630904
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  50630864 caacctttactattttatccgatgtaggacatataactcac 50630904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1731756 - 1731811
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||| ||| |||||||||||||||||   ||||||||||||    
T  1731756 caacctttactgttttatctgatgtgggacatataactcacatttgcacacaacaa 1731811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4955426 - 4955481
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||| ||||||||||||||| || ||||||||||||||   ||||||||||||    
T  4955426 caaccttaactattttatccgatatgagacatataactcacacttgcacacaacaa 4955481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10245967 - 10245912
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||| ||||||||||||   ||||||||||||    
T  10245967 caacctttactcttttatccgatgtggggcatataactcacacttgcacacaacaa 10245912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19504752 - 19504713
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactca 40  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  19504752 caacttttactattttatccgatatgggacatataactca 19504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44620343 - 44620304
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactca 40  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  44620343 caacctttactattttatcccatgtgggacatataactca 44620304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49076557 - 49076612
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| ||| |||||||||||||   ||||||||||||    
T  49076557 caacctttactgttttatccgatatggtacatataactcacacttgcacacaacaa 49076612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2740747 - 2740693
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||| || |||||||| |||||||||||||||||   |||||||||||    
T  2740747 caacctttactgttctatccgatgtgggacatataactcacacttgcacacaaca 2740693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 3341174 - 3341120
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||| |||||||| || |||||||||||||||||   ||||||||||||    
T  3341174 aacctttactcttttatccaatgtgggacatataactcacacttgcacacaacaa 3341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44620707 - 44620654
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaac 54  Q
    |||||| |||||||| ||||||| |||||||||||||||||   ||||||||||    
T  44620707 caacctctactatttcatccgatgtgggacatataactcacacttgcacacaac 44620654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2741118 - 2741078
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||| |||| ||| |||||||||||||||||    
T  2741118 caacctttactattctatctgatgtgggacatataactcac 2741078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6975565 - 6975605
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| || ||||||||||||||    
T  6975565 caacctttactattttatcggatgtgagacatataactcac 6975605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10246394 - 10246358
Alignment:
Q  1 caacctttactattttatccgatttgggacatataac 37  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  10246394 caacctttactcttttatccgatttgagacatataac 10246358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16888925 - 16888965
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  16888925 caacctttacttttctatccgatgtgggacatataactcac 16888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16889645 - 16889685
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| || ||||||||||| ||||||||||||||    
T  16889645 caacctttacttttctatccgatttgagacatataactcac 16889685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20825883 - 20825843
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  20825883 caacctttactcttttatccgatgtggaacatataactcac 20825843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34646758 - 34646798
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  34646758 caacatttactgttttatccgatgtgggacatataactcac 34646798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49880207 - 49880167
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  49880207 caacctttactattttattcaatgtgggacatataactcac 49880167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50002473 - 50002433
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| || ||||||||||||||    
T  50002473 caacctttactcttttatccgatgtgagacatataactcac 50002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 54017704 - 54017744
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  54017704 caacctttactattttatctgacgtgggacatataactcac 54017744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 54108960 - 54108928
Alignment:
Q  1 caacctttactattttatccgatttgggacata 33  Q
    ||||||||||||||||||||||| |||||||||    
T  54108960 caacctttactattttatccgatgtgggacata 54108928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55933233 - 55933273
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  55933233 caacccttactattttatccgatgtaggacatataactcac 55933273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 31468857 - 31468912
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  31468857 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 31468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 36785674 - 36785729
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||||||||||||||   ||||||||||||    
T  36785674 caacctttactattttatccgatgtgggacatataactcacacttgcacacaacaa 36785729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36178716 - 36178756
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  36178716 caacctttactattttatccgatgtgggacatataactcac 36178756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37106235 - 37106195
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  37106235 caacctttactattttatccgatgtgggacatataactcac 37106195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41283586 - 41283626
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  41283586 caacctttactattttatccgatatgggacatataactcac 41283626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16542496 - 16542441
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| |||||| ||||||||||   ||||||||||||    
T  16542496 caacctttactattttatccgatgtgggacttataactcacacttgcacacaacaa 16542441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 29676949 - 29676895
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||||||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  29676949 aacctttactcttttatccgatgtgggacatataactcacacctgcacacaacaa 29676895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 37632709 - 37632762
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    |||||||||||||||||||||| | |||||||||||||||   |||||||||||    
T  37632709 aacctttactattttatccgatgtaggacatataactcacacttgcacacaaca 37632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5542736 - 5542776
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  5542736 caacctttactattttattcgatatgggacatataactcac 5542776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5543109 - 5543149
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  5543109 caacctttactattttatcggatgtgggacatataactcac 5543149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6421432 - 6421392
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  6421432 caacctttactcttttatccgatgtgggacatataactcac 6421392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14745778 - 14745818
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  14745778 caacctttactattttatccaatgtgggacatataactcac 14745818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37105971 - 37105931
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  37105971 caacctttactattttattcgatgtgggacatataactcac 37105931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38796329 - 38796384
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||| |||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  38796329 caacatttactgttttatccgatgtgggacatataactcacacttgcacacaacaa 38796384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 36178382 - 36178420
Alignment:
Q  3 acctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  36178382 acctttactattttatccgaagtgggacatataactcac 36178420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6421351 - 6421314
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  6421351 caacctttactcttttatccgatgtgggacatataact 6421314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 962645 - 962605
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| || |||||||| |||||||||||||||||    
T  962645 caacctttacttttctatccgatgtgggacatataactcac 962605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7598656 - 7598616
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  7598656 caacctttacttttttatctgatgtgggacatataactcac 7598616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14745405 - 14745445
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||| |||||||||||| |||| |||||||||||||||||    
T  14745405 caaccattactattttattcgatgtgggacatataactcac 14745445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15511606 - 15511659
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||| | || |||||||||||||||  ||||||||||||    
T  15511606 caacctttactcttttatccgttgtgtgacatataactcact--tgcacacaacaa 15511659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15880310 - 15880270
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  15880310 caacctttactcttttatccgatgtggaacatataactcac 15880270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31899537 - 31899577
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  31899537 caacatttactattttatccgatgtggaacatataactcac 31899577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41416282 - 41416323
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  41416282 caacctttactattttatccgatgtgggacatataactcact 41416323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3038401 - 3038441
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  3038401 caacctttactattttatccgatgtgggacatataactcac 3038441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6731951 - 6731911
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  6731951 caacctttactattttatccgatgtgggacatataactcac 6731911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 3670106 - 3670067
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  3670106 aacctttactattttatccgatgtgggacatataactcac 3670067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 45123052 - 45123013
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  45123052 aacctttactattttatccgatgtgggacatataactcac 45123013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6651550 - 6651509
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  6651550 caacctttactattttatccgatgtgagacatataactcact 6651509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18371767 - 18371808
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  18371767 caacctttactattttatccgatgtgtgacatataactcact 18371808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 18372485 - 18372522
Alignment:
Q  4 cctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18372485 cctttactattttatccgatgtgggacatataactcac 18372522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 147498 - 147458
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  147498 caacctttactcttttatccgatgtgggacatataactcac 147458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3669734 - 3669694
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  3669734 caacctttactattttatctgatgtgggacatataactcac 3669694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18372367 - 18372407
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  18372367 caacctttactattttatccgatgtgagacatataactcac 18372407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18372810 - 18372850
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  18372810 caacctttactattttatccgatgtgtgacatataactcac 18372850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30441128 - 30441088
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  30441128 caacctttactattttagccgatgtgggacatataactcac 30441088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34835256 - 34835216
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  34835256 caacctttactattttatcggatgtgggacatataactcac 34835216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45122021 - 45122061
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  45122021 caacctttactattttatgcgatgtgggacatataactcac 45122061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45122168 - 45122208
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  45122168 caacctttactattttatccgatgtgagacatataactcac 45122208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9309402 - 9309347
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    |||| |||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  9309402 caacatttactcttttatccgatgtgggacatataactcacacttgcacacaacaa 9309347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33113478 - 33113517
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactca 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  33113478 caacctttactattttatccgatgtaggacatataactca 33113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 34834922 - 34834883
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  34834922 aacctttactattttatccaatgtgggacatataactcac 34834883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9608792 - 9608738
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||| || |||||||| |||||||||||||||||   |||||||||||    
T  9608792 caacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 9608738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41972205 - 41972151
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||| || |||||||| |||||||||||||||||   |||||||||||    
T  41972205 caacctttacttttctatccgatgtgggacatataactcacacttgcacacaaca 41972151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 70385 - 70426
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcact 42  Q
    |||| |||||| ||||||||||| ||||||||||||||||||    
T  70385 caacatttactcttttatccgatgtgggacatataactcact 70426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25561755 - 25561792
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  25561755 caacctttactcttttatccgatgtgggacatataact 25561792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1013982 - 1014022
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  1013982 caacttttactattttatccgatgtggaacatataactcac 1014022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6876973 - 6877029
Alignment:
Q  1 caacctttactattttatccgatttgggac-atataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||||| |||||||||||   ||||||||||||    
T  6876973 caacctttacttttttatccgatgtgggactatataactcacacttgcacacaacaa 6877029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18373042 - 18373082
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||  |||||||||||| ||||    
T  18373042 caacctttactattttatccgaagtgggacatataaatcac 18373082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18380128 - 18380168
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| ||||| |||||||||||    
T  18380128 caacctttactattttattcgatgtgggatatataactcac 18380168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25561927 - 25561967
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||| ||||||||||| |||||||||||||||||    
T  25561927 caacgtttactcttttatccgatgtgggacatataactcac 25561967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37544601 - 37544641
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  37544601 caacctttactattttatccgatgtgcgacttataactcac 37544641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 253 - 293
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  253 caacctttactattttatccgatgtgggacatataactcac 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 625 - 665
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  625 caacctttactcttttaaccgatgtgggacatataactcac 665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2378173 - 2378133
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  2378173 caacctttactattttatccgatgtgggacatataactcac 2378133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9062460 - 9062500
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  9062460 caacctttactattttatccgatgtgggacatataactcac 9062500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14748449 - 14748489
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  14748449 caacctttactattttatccgatgtgggacatataactcac 14748489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26544096 - 26544056
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  26544096 caacctttactattttatccgatgtgggacatataactcac 26544056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29518550 - 29518510
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  29518550 caacctttactattttatccgatgtgggacatataactcac 29518510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29518967 - 29518927
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  29518967 caacctttactattttatccgatgtgggacatataactcac 29518927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32741226 - 32741186
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  32741226 caacctttactattttatccgatgtgggacatataactcac 32741186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2579983 - 2580038
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  2579983 caacctttactcttttatccgatgtgggacatataactcacacttgcacacaacaa 2580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3058273 - 3058236
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3058273 caacctttactattttatccgatgtgggacatataact 3058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1950296 - 1950336
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  1950296 caacctttactcttttatccgatgtgggacatataactcac 1950336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3409306 - 3409266
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  3409306 caacctttactattttatctgatgtgggacatataactcac 3409266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32460691 - 32460731
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  32460691 caacctttactattttatacgatgtgggacatataactcac 32460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35210251 - 35210211
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  35210251 caacctttactattttatccgatgtgagacatataactcac 35210211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 593820 - 593860
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||||||||| |||||||    
T  593820 caacctttactcttttatccgatgtgggacatacaactcac 593860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1127407 - 1127367
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||| ||||| ||||| |||||||||||    
T  1127407 caacctttactattttacccgatgtgggatatataactcac 1127367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2377801 - 2377761
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  2377801 caacctttactcttttaaccgatgtgggacatataactcac 2377761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3415505 - 3415465
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||  ||| |||||||||||||||||    
T  3415505 caacctttactattttatgtgatgtgggacatataactcac 3415465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3537258 - 3537298
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  3537258 caacctttactattttatccgatgtgggacatataactcac 3537298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44290569 - 44290609
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44290569 caacctttactattttatccgatgtgggacatataactcac 44290609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44290936 - 44290976
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  44290936 caacctttactattttatccgatgtgggacatataactcac 44290976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 50052134 - 50052174
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  50052134 caacctttactattttatccgatgtgggacatataactcac 50052174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34364554 - 34364499
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| || ||||||||||||||   ||||||||||||    
T  34364554 caacctttactattttatccgatgtgagacatataactcacacttgcacacaacaa 34364499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41184536 - 41184591
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| || ||||||||||||||   ||||||||||||    
T  41184536 caacctttactattttatccgatgtgagacatataactcacacttgcacacaacaa 41184591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3537710 - 3537747
Alignment:
Q  1 caacctttactattttatccgatttgggacatataact 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  3537710 caacctttactattttatccgatgtgggacatataact 3537747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3550767 - 3550727
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  3550767 caacctttactattttatctgatgtgggacatataactcac 3550727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17294624 - 17294584
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  17294624 caacctttactcttttatccgatgtgggacatataactcac 17294584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34649485 - 34649445
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  34649485 caacctttactcttttatccgatgtgggacatataactcac 34649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40082454 - 40082414
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40082454 caacctttactattttatccgatgtaggacatataactcac 40082414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41142419 - 41142379
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  41142419 caacctttactgttttatccgatgtgggacatataactcac 41142379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3875442 - 3875497
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| || ||||||||||| |||  ||||||||||||    
T  3875442 caacctttacttttttatccgatgtgtgacatataactgactcttgcacacaacaa 3875497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34364972 - 34364917
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||| ||||||||||||| || ||||||||||||||   ||||||||||||    
T  34364972 caacctttattattttatccgatgtgtgacatataactcacacttgcacacaacaa 34364917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35154150 - 35154205
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||| ||| |||||||||||||||||   ||||||||||||    
T  35154150 caacctttactcttttatctgatgtgggacatataactcacacttgcacacaacaa 35154205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45494089 - 45494124
Alignment:
Q  1 caacctttactattttatccgatttgggacatataa 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45494089 caacctttactattttatccgatgtgggacatataa 45494124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 4878842 - 4878796
Alignment:
Q  9 actattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  4878842 actattttatccgatgtggaacatataactcacaattgcacacaaca 4878796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24600425 - 24600479
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    ||||||||||| || |||||||| |||||||||||||||||   |||||||||||    
T  24600425 caacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 24600479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37556159 - 37556118
Alignment:
Q  1 caacctttactatttt-atccgatttgggacatataactcac 41  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  37556159 caacctttactatttttatccgatgtgggacatataactcac 37556118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 44685502 - 44685449
Alignment:
Q  2 aacctttactattttatccgatttgggacatataactcactaatgcacacaaca 55  Q
    |||||||||| || |||||||| |||||||||||||||||   |||||||||||    
T  44685502 aacctttacttttctatccgatatgggacatataactcacacttgcacacaaca 44685449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 26661633 - 26661673
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||| ||||| |||||||||||||||||    
T  26661633 caacctttactcttttacccgatgtgggacatataactcac 26661673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29798246 - 29798206
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  29798246 caacctttactattttatccaatgtaggacatataactcac 29798206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32594827 - 32594867
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  32594827 caacctttactattttatctgatgtaggacatataactcac 32594867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37555777 - 37555737
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||| ||||||||||||||| |||||| ||||||||||    
T  37555777 caaccttcactattttatccgatgtgggacttataactcac 37555737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41759530 - 41759490
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    |||| |||||||||||||||||| || ||||||||||||||    
T  41759530 caacttttactattttatccgatgtgtgacatataactcac 41759490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45084429 - 45084389
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| ||||||||||| ||||| |||||||||||    
T  45084429 caacctttactgttttatccgatgtgggagatataactcac 45084389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 48588599 - 48588639
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  48588599 caacctttactattttatccgatgtcggacatagaactcac 48588639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5443 - 5388
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| | |||||||||||||||   ||||||||||||    
T  5443 caacctttactattttatccgatgtaggacatataactcacacttgcacacaacaa 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5824 - 5769
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||||||| || ||||||||||||||   ||||||||||||    
T  5824 caacctttactattttatccgatgtgcgacatataactcacacttgcacacaacaa 5769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3096 - 3151
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||| ||||||||||| |||||||||||||||||   ||||||||||||    
T  3096 caacctttactcttttatccgatgtgggacatataactcacacctgcacacaacaa 3151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1217 - 1257
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcac 41  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  1217 caacctttactcttttatccaatgtgggacatataactcac 1257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17567 - 17622
Alignment:
Q  1 caacctttactattttatccgatttgggacatataactcactaatgcacacaacaa 56  Q
    ||||||||||||||||||| ||| || ||||||||||||||   ||||||||||||    
T  17567 caacctttactattttatctgatgtgtgacatataactcacacttgcacacaacaa 17622  T

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