View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_26 (Length: 299)
Name: NF2211_low_26
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 26428398 - 26428122
Alignment:
| Q |
10 |
gcataggtattatgtaactgcctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagctg |
109 |
Q |
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| T |
26428398 |
gcataggtattatgtaactgcctcaaacttctccttaattttctcaacccacaaactactatgaggcagtgaagatgaaatcagttttatatcatagctg |
26428299 |
T |
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| Q |
110 |
tactctcaacaacaacactgtactttacacttctttttctcatttctctctcaaaataaagtcattcgtagtcnnnnnnnacccttcaa--tctctctct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
26428298 |
tactctcaacaacaacactgtactttacacttctttttctcatttctctctcaaaataaagtcattcgtagtctttttttacccttcaatctctctctct |
26428199 |
T |
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| Q |
208 |
caaaccctaaaaccttgcaaagattcacacatatctacaagatttcttctctagaagatttcttctatatactttct |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26428198 |
caaaccctaaaaccttgcaaagattcacacatatctacaagatttcttctctagaagatttcttctatatactttct |
26428122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 28008623 - 28008773
Alignment:
| Q |
84 |
atgaaatcagttttatat--catagctgtactctcaacaacaacactgtacttt-acacttctttttctcatttctctctcaaaataaagtcattcgtag |
180 |
Q |
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|||||||||||||||||| |||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || || |
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| T |
28008623 |
atgaaatcagttttatatatcatagctgtattctct-caacaacactctacttttacacttctttttctcatttctctctcaaaataaagtcatacgcag |
28008721 |
T |
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| Q |
181 |
tcnnnnnnnacccttcaatctctctctcaaaccctaaaaccttgcaaagatt |
232 |
Q |
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|| ||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
28008722 |
tctttttttccccttcaatctctctctcaaaccctcaaacctagcaaagatt |
28008773 |
T |
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