View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_low_28 (Length: 296)

Name: NF2211_low_28
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_low_28
NF2211_low_28
[»] chr2 (9 HSPs)
chr2 (1-282)||(16656408-16656690)
chr2 (1-153)||(43626332-43626484)
chr2 (1-165)||(12244329-12244493)
chr2 (1-87)||(12257918-12258004)
chr2 (1-165)||(12235810-12235974)
chr2 (1-165)||(14705475-14705639)
chr2 (1-153)||(16661004-16661156)
chr2 (7-84)||(7543295-7543372)
chr2 (1-84)||(12000345-12000428)
[»] chr7 (26 HSPs)
chr7 (2-196)||(7876729-7876923)
chr7 (5-195)||(8647717-8647907)
chr7 (1-190)||(1302323-1302512)
chr7 (1-188)||(8668477-8668664)
chr7 (1-190)||(3148383-3148572)
chr7 (1-165)||(8660256-8660420)
chr7 (1-174)||(6790422-6790595)
chr7 (2-165)||(13332076-13332239)
chr7 (11-191)||(8655371-8655551)
chr7 (1-195)||(8630240-8630434)
chr7 (1-180)||(8610676-8610855)
chr7 (1-156)||(10492936-10493091)
chr7 (2-144)||(8602747-8602889)
chr7 (1-153)||(8584474-8584626)
chr7 (2-88)||(8591411-8591497)
chr7 (2-84)||(8582676-8582758)
chr7 (2-84)||(8572603-8572685)
chr7 (2-87)||(8635503-8635588)
chr7 (2-84)||(8546688-8546770)
chr7 (35-186)||(17269146-17269297)
chr7 (1-96)||(27829340-27829435)
chr7 (2-90)||(8577302-8577390)
chr7 (5-93)||(17261408-17261496)
chr7 (1-75)||(8104077-8104151)
chr7 (2-87)||(8538817-8538902)
chr7 (2-57)||(8568851-8568906)
[»] chr1 (3 HSPs)
chr1 (1-167)||(4677464-4677630)
chr1 (1-150)||(15596071-15596220)
chr1 (1-190)||(34465149-34465338)
[»] chr4 (5 HSPs)
chr4 (1-180)||(9322975-9323154)
chr4 (1-180)||(9377454-9377633)
chr4 (1-180)||(9334947-9335125)
chr4 (1-150)||(35133466-35133615)
chr4 (1-166)||(30776129-30776294)
[»] chr5 (2 HSPs)
chr5 (1-173)||(42554105-42554277)
chr5 (1-164)||(28220959-28221122)
[»] chr8 (2 HSPs)
chr8 (1-156)||(43745836-43745988)
chr8 (2-78)||(12529881-12529957)
[»] chr6 (3 HSPs)
chr6 (1-72)||(11159652-11159723)
chr6 (31-89)||(11198234-11198292)
chr6 (1-38)||(28911326-28911363)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 16656690 - 16656408
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||    
T  16656690 agcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctctgttgtga 16656591  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaaac-nn 199  Q
     | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |       
T  16656590 cggtccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaaccaaa 16656491  T
Q  200 nnnnnnnnnntcatttcttaaattaaaaccatagagcaaataagaactagcctgcagttgtcatttcgaaaaataaatcatct 282  Q
              |||||||||||| ||| | |||||| ||||||| ||||||  |||| |||||||||||||||||||| |||||    
T  16656490 aaaacaaaaatcatttcttaaaataagagcatagatcaaataataactagaatgcatttgtcatttcgaaaaataaaacatct 16656408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 43626332 - 43626484
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||||||||||||||| || | |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||||  | |      
T  43626332 agcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgttt 43626431  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccac 153  Q
    |  || | ||||||| ||| ||| ||||| |||||||||||||||||||||||    
T  43626432 tcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccac 43626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 12244493 - 12244329
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||| || || || ||||| ||||| || || |     ||     
T  12244493 agcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgt 12244394  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 165  Q
    ||||||  ||| ||  ||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  12244393 tgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12258004 - 12257918
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctc 87  Q
    ||||||||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||||||||    
T  12258004 agcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatctc 12257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 12235810 - 12235974
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||||||||| ||||  |  |||||||||||||||||||| |||||||| || ||||| || ||||| |||||||| ||||     ||     
T  12235810 agcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatctcaactcgagagtgc 12235909  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 165  Q
    ||||||  ||| ||  ||||||||||||| ||||| ||||||||||| ||||| ||| |||||||    
T  12235910 tgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagcaagtccttc 12235974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 14705475 - 14705639
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||||||||  ||||  |  |||||||||||||||||||| |||||||| || ||||| || ||||| ||||| || ||||  |  ||     
T  14705475 agcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgtgaatgatttcaactcgataatgt 14705574  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 165  Q
    ||||||  ||| ||  |||||||||| || ||||| ||||||||||||||||| |||| ||||||    
T  14705575 tgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagcacatccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 16661156 - 16661004
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||| |||| | |||||||||| ||| ||| ||||||||||||||||||||  || |||| ||||  || ||||| || ||||| |||||||| |      
T  16661156 agcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttc 16661057  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccac 153  Q
    | ||||| ||| ||| |||||||||| || |||||||| |||||||| |||||    
T  16661056 tcttccaaccaaacagcaacacatgagtatgttgttcctaggtctatgcccac 16661004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 7543295 - 7543372
Alignment:
Q  7 atcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 84  Q
    |||||| |||||||| ||||  |  |||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  7543295 atcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgat 7543372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 12000345 - 12000428
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 84  Q
    ||||||||||||||  ||||||||||  | ||||||||||||| ||||||||||| || |||| ||||| || ||||| |||||    
T  12000345 agcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgat 12000428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 7876923 - 7876729
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgat 101  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| |||||||| || || || ||||| || || |    
T  7876923 gcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgtt 7876824  T
Q  102 gttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaaa 196  Q
      || | ||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||| |||||    
T  7876823 catcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatctttcaagtaaaa 7876729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 8647717 - 8647907
Alignment:
Q  5 gcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgtt 104  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| || || |  |    
T  8647717 gcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcat 8647816  T
Q  105 ccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaa 195  Q
    | | ||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||| ||||    
T  8647817 caagccacacagcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttcgtgttttttcgccatgatctttcaagtaaa 8647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 1302323 - 1302512
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||| |||| |||||||| ||||  |||||||||||||| || |||    
T  1302323 agcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtga 1302422  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaa 190  Q
    |  |||| ||||||| ||||||| |||||||| ||||||||||||||||| || ||||||||||| |  ||| | ||||| |||||||||    
T  1302423 ttctccagccacacagcaacacacgaataagtagttccaaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaa 1302512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8668477 - 8668664
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||| |||||||||||||| ||||   ||||||||||||||||||||||| ||| ||||||||| |||||||| || ||||| ||||| |  ||     
T  8668477 agcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgt 8668576  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttc 188  Q
    || || | ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| | || ||||||||| |||||||    
T  8668577 tgatcaagccacacagcaacacatgaataggttgttccaagatctattcccactgcacgtccttcgtattcttttgccatgatctttc 8668664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3148383 - 3148572
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||| || ||||| |||||||| ||     
T  3148383 agcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgc 3148482  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaa 190  Q
    |  || | ||| ||| |||| || ||||| |||||||||||||| ||||||||||||| |||||| |  ||||||||||| | |||||||    
T  3148483 tcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcccactgcacatccttcgtacttttttgccatgacctttcaa 3148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 8660256 - 8660420
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||| ||||  |||||||| ||||  || |||    
T  8660256 agcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtga 8660355  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 165  Q
    |  |||| ||||||| ||||||| ||||| |||||||||||||||||||| |  |||||||||||    
T  8660356 ttctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagcacgtccttc 8660420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 6790422 - 6790595
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| ||||||||||| ||||  ||||||||||||||||||||||| ||| |||| |||||||||||||| || ||||| ||||| || ||     
T  6790422 agcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgtgt 6790521  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttt 174  Q
    |  || | ||||||||||||||| ||||| |||||||| |||||||||||||| |||| |||||| | ||||||    
T  6790522 tcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacagcacatccttcgtatttttt 6790595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 13332239 - 13332076
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgat 101  Q
    ||||||||||||||||| ||||||||||   |||||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||| |  || |    
T  13332239 gcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgtt 13332140  T
Q  102 gttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttc 165  Q
      || | ||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||    
T  13332139 catcaagccacacagcaacacatgagtaggttgttccaaggtcgattcccactgcacgtccttc 13332076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 8655371 - 8655551
Alignment:
Q  11 ccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatcc 110  Q
    |||||||||||||||| || |||||||||||||| ||||||||| ||||| || ||||| |||||||| || ||||| ||||| || ||||  || | ||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagcc 8655470  T
Q  111 acacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaac 191  Q
    ||||| ||||||||||||| |||||||| ||||||||||| || |||||||| || | |||| ||||||||| || |||||    
T  8655471 acacagcaacacatgaataggttgttccgaggtctattccgacagcacgtccctcgtattttcttgccataacctgtcaac 8655551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8630240 - 8630434
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||| |||||| ||||||||||||||  || |||||||| || ||||||||  || | || ||||  |||||||| || ||||| ||||||||||      
T  8630240 agcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttt 8630339  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaactaaa 195  Q
    | ||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| ||| |||| || |||||| ||||||| ||| ||||| ||||    
T  8630340 tcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccacagcatgtccatcgtgttttcttgccatgatccttcaagtaaa 8630434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 8610676 - 8610855
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| |||||||||||||||  || |||||||||||||||||| || |||||||||||||| ||||| || || |||||  ||||||| |      
T  8610676 agcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatctcagctctgttgttt 8610775  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccat 180  Q
    ||||||  ||| ||| ||||||||||||| ||||||||||| || ||||| |  ||| |||| |||| |||||| |||||    
T  8610776 tgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtccctcatattttttggccat 8610855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 10493091 - 10492936
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| ||||||||||||||||   |||||||||||||||||||||| ||||| |||||||| |||||||| || || || ||||| |  ||     
T  10493091 agcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttcaactctttggtgt 10492992  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgc 156  Q
    |  || | ||| ||| |||||||||| || ||||||||||| ||||||||||||||    
T  10492991 tcatcaagccatacagcaacacatgagtaggttgttccaagatctattcccactgc 10492936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 8602747 - 8602889
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgat 101  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||||||||||| || |||||||||||||| |||||||| || |||||| | ||||| |  |    
T  8602747 gcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgccctgttgtttt 8602846  T
Q  102 gttccatccacacaccaacacatgaataagttgttccaaggtc 144  Q
    | |||  ||| ||| | ||||||||||| ||||||||||||||    
T  8602847 ggtcctgccaaacagctacacatgaataggttgttccaaggtc 8602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8584626 - 8584474
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||| |||||| ||||||||||||||  || ||||||||||| ||||||||  || | || ||||  || ||||| || ||||| ||||||||||      
T  8584626 agcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttt 8584527  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccac 153  Q
    | ||||| ||| ||||||||||| ||||| |||||||||||||||||||||||    
T  8584526 tcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccac 8584474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 8591411 - 8591497
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctct 88  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||  |||| |||||||| |||||||| || ||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctct 8591497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 8582676 - 8582758
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 84  Q
    ||||||||||||||||| ||||||  || ||| ||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  8582676 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgat 8582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 8572603 - 8572685
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 84  Q
    ||||||||||| ||||| ||||||  || ||| ||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  8572603 gcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgtgtatgat 8572685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 8635588 - 8635503
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctc 87  Q
    |||||||||||||||||||||||  | | ||||||||||||| ||||||||||  ||||||| ||||| |||||||| ||||||||    
T  8635588 gcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgatctc 8635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 8546688 - 8546770
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgat 84  Q
    |||||||||||||||| ||||||   ||  |||||||||||| |||||||||||||| |||||||||| |||||||| |||||    
T  8546688 gcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgat 8546770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 17269146 - 17269297
Alignment:
Q  35 aaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctgatgttccatccacacaccaacacatgaataagttg 134  Q
    |||||||||||||| || || ||| |||| ||||| ||||||||||| ||||| |||||    || | |||   ||||||| |||||||||| || || |    
T  17269146 aaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatctcaactctaccgtgttcttcatgccacacagcaacacatgagtatgtcg 17269245  T
Q  135 ttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctt 186  Q
    | |||||||||||||| |  |||| |||||| || |||||||||||||||||    
T  17269246 tcccaaggtctattccgatggcacatccttcttgattttttgccataatctt 17269297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27829435 - 27829340
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgtt 96  Q
    ||||||||||||||||||||| || |  |  |||||||||||| |||||||||||||  |||| ||||| |||||||| || ||||| ||||||||    
T  27829435 agcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttgttcattgtgaataatctccactctgtt 27829340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 8577302 - 8577390
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctac 90  Q
    |||||||| |||||||| ||||||  ||  || ||||||||| ||||||| || |||||||||||||| ||||||||||| || |||||    
T  8577302 gcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttccttgatcattgtgtataatttctac 8577390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 17261408 - 17261496
Alignment:
Q  5 gcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactct 93  Q
    |||||||| |||||||||| ||| | ||  ||||||||||||||||| ||  || |||||||||| |||||||| |||||||| |||||    
T  17261408 gcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8104077 - 8104151
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcatt 75  Q
    |||||||||||| |||||||||| |  || ||||||||||||| |||| ||||| |||||||| ||||| |||||    
T  8104077 agcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 8538817 - 8538902
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctc 87  Q
    ||||||||||||||||| | ||||  || | | ||| ||||| |||||||||| ||| |||||||||| || ||||||||||||||    
T  8538817 gcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggttttgtttccttgatcgttgtgtatgatctc 8538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 8568851 - 8568906
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 57  Q
    ||||||||||||||||| ||||||   | ||||||||||||| |||||||||||||    
T  8568851 gcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtgttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 4677630 - 4677464
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||| ||||| |||||||  || ||||| |||||||| |||    
T  4677630 agcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtga 4677531  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcat 167  Q
    |  |||| ||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  4677530 ttctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcat 4677464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 15596071 - 15596220
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||| || ||||| ||||| |||||     
T  15596071 agcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgt 15596170  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 150  Q
    |  || | ||||||| ||||||| ||||| ||||||||||||||||||||    
T  15596171 tcatcaagccacacagcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 34465338 - 34465149
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||| ||| ||||| |||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||  || |||||||||||  | ||     
T  34465338 agcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactctactgtgt 34465239  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccataatctttcaa 190  Q
    ||||||  ||| ||  |||||||||| || ||||| ||||||||||||||||| ||||||||||||  |||||| ||||| |||||||||    
T  34465238 tgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagcacgtccttcacattttttcgccatgatctttcaa 34465149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 9323154 - 9322975
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  ||     
T  9323154 agcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgt 9323055  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccat 180  Q
    || || | ||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  9323054 tgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 9377633 - 9377454
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  ||     
T  9377633 agcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgt 9377534  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccat 180  Q
    || || | ||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  9377533 tgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9377454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 9335125 - 9334947
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||| |||||||||| ||||   ||||||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||||| |  ||     
T  9335125 agcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgt 9335027  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgtttttttgccat 180  Q
    || || | ||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  9335026 tgatcaagccacacagcaacacaagaataggttgttccaagatctatacccactgcacgtccttcgtgttcttttgccat 9334947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 35133466 - 35133615
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||||||||| |||||||||||||| | ||||||||||| | |||||||||||||| |||| | ||| || ||||| ||||| || ||||  |  ||     
T  35133466 agcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatttcgactcgatagtgt 35133565  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcc 150  Q
    |||||   ||| ||  ||||||||||||| |||||||| |||||||||||    
T  35133566 tgttcttgccatactgcaacacatgaatacgttgttccgaggtctattcc 35133615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 30776129 - 30776294
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||| |||| | |||||||||| ||| ||||||||||||||||||||||||  || || | ||||  || ||||| || || || |||||||| |      
T  30776129 agcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttc 30776228  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttca 166  Q
    |  |||| ||| ||| | ||||| || || ||||||||||||||||| ||||| ||| ||||||||    
T  30776229 tcctccagccaaacagccacacacgagtacgttgttccaaggtctatccccacggcatgtccttca 30776294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 42554277 - 42554105
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||| ||||| |||||||| || ||||| ||||| || ||     
T  42554277 agcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgt 42554178  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtccttcatgttttt 173  Q
    |  ||   |||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  42554177 tcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcccactgcacgtccttcatattttt 42554105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28220959 - 28221122
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    ||||||||| ||||||||||||| |||||  |||||||||||||||||||| |||||| |||| ||||| |||||||| || ||||| || || || ||     
T  28220959 agcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgt 28221058  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgcacgtcctt 164  Q
    |  ||   ||||||| ||||||||||||| ||||||||||| ||||||||||| |||| |||||    
T  28221059 tcatcttgccacacagcaacacatgaatacgttgttccaagatctattcccacagcacatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 43745836 - 43745988
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctctactctgttctga 100  Q
    |||||| ||||| |||||||||| || || ||| ||||||||||||||||   ||||| |||| ||||| |||||||| || ||||| ||||| || ||     
T  43745836 agcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtgaataatctcaactctattttgt 43745932  T
Q  101 tgttccatccacacaccaacacatgaataagttgttccaaggtctattcccactgc 156  Q
    |  ||   ||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  43745933 tcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcccactgc 43745988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 12529881 - 12529957
Alignment:
Q  2 gcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtg 78  Q
    ||||||| ||||||||| || |||  || ||| ||||||||| |||||||||||||| |||||||||| ||||||||    
T  12529881 gcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 12529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11159652 - 11159723
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccttggtc 72  Q
    |||||||||||||||||  ||||||   | |||||| |||||| |||||||||||||||| || ||||||||    
T  11159652 agcagcatcaccaatcattctttgagagtcagtgaaggcaacataagaaggtgttgttctattcccttggtc 11159723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 11198234 - 11198292
Alignment:
Q  31 agtgaaagcaacaaaagaaggtgttgttctgtttccttggtcattgtgtatgatctcta 89  Q
    |||||| |||||| |||||||||||||||| || |||||||| ||  ||||||||||||    
T  11198234 agtgaaggcaacataagaaggtgttgttctattcccttggtcgttcggtatgatctcta 11198292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28911326 - 28911363
Alignment:
Q  1 agcagcatcaccaatcaacctttgatcatgagtgaaag 38  Q
    |||||||||||||||||||||||||||||  |||||||    
T  28911326 agcagcatcaccaatcaacctttgatcatcggtgaaag 28911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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