View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_low_29 (Length: 295)

Name: NF2211_low_29
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_low_29
NF2211_low_29
[»] chr4 (16 HSPs)
chr4 (13-196)||(5203355-5203538)
chr4 (78-201)||(5160877-5161001)
chr4 (204-278)||(5161040-5161114)
chr4 (78-201)||(5173783-5173907)
chr4 (78-200)||(7143023-7143146)
chr4 (78-200)||(5183118-5183241)
chr4 (204-278)||(4855996-4856070)
chr4 (90-200)||(4856110-4856221)
chr4 (98-200)||(5214701-5214804)
chr4 (204-278)||(5214844-5214918)
chr4 (132-200)||(4841613-4841682)
chr4 (132-197)||(5196578-5196644)
chr4 (204-278)||(5183281-5183356)
chr4 (235-276)||(5203556-5203597)
chr4 (205-278)||(4841499-4841572)
chr4 (205-278)||(5173947-5174020)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 5203355 - 5203538
Alignment:
Q  13 aatattttaggtggtttccttccttggtttatctatttgaagtagtcgtggaatagcttcgaaggagaatgatcttgctggatctataccatttgaactg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5203355 aatattttaggtggtttccttccttggtttatctatttgaagtagtcgtggaatagcttcgaaggagaatgatctcgctggatctataccatttgaactg 5203454  T
Q  113 tctggaagttcacagctgaaacttctagacttgaggagaacaaattttcaggtaacattcccaactggatggataatctctcag 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5203455 tctggaagttcacagctgaaacttttagacttgaggagaacaaattttcaggtaacattcccaactggatggataatctttcag 5203538  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 5160877 - 5161001
Alignment:
Q  78 agaatgatcttgctggatctataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaa 176  Q
    ||||||||||  |||||||||||||| |||||||||||| ||| ||| | ||  ||||||| || |||||| ||||||||||||||||||| ||||||||    
T  5160877 agaatgatctctctggatctataccaattgaactgtctgaaagctcaaaactacaacttctggatttgagggagaacaaattttcaggtaaaattcccaa 5160976  T
Q  177 ctggatggataatctctcagagttg 201  Q
     ||||| ||||||||||||||||||    
T  5160977 ttggattgataatctctcagagttg 5161001  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 5161040 - 5161114
Alignment:
Q  204 tattccaattcaattgtatcgattaagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  5161040 tattccaattcaattgtgtcgattaaaaaagatcaacatgatggacctatcgcggaacatgttcaatgcttcaat 5161114  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 201
Target Start/End: Original strand, 5173783 - 5173907
Alignment:
Q  78 agaatgatcttgctggatctataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaa 176  Q
    ||||||||||  |||||| ||||||||||||||| |||| | | ||| | ||  |||||||||| |||||| |||||||| |||||||||| ||||||||    
T  5173783 agaatgatctctctggatttataccatttgaactctctgaaggctcaaaactacaacttctagatttgagggagaacaaactttcaggtaaaattcccaa 5173882  T
Q  177 ctggatggataatctctcagagttg 201  Q
    |||||||||||| ||||||||||||    
T  5173883 ctggatggataagctctcagagttg 5173907  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 7143023 - 7143146
Alignment:
Q  78 agaatgatcttgctggatctataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaa 176  Q
    ||||||||||  |||||||||||||||||||||| |||| | | ||||| ||  ||||| |||| |||||| |||||||| ||||| |||| ||||||||    
T  7143023 agaatgatctctctggatctataccatttgaactctctgaaggctcacaactacaacttttagatttgagggagaacaaactttcaagtaaaattcccaa 7143122  T
Q  177 ctggatggataatctctcagagtt 200  Q
    |||||||||||| || ||||||||    
T  7143123 ctggatggataagctatcagagtt 7143146  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 5183118 - 5183241
Alignment:
Q  78 agaatgatcttgctggatctataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaa 176  Q
    ||||||||||  ||||||| ||||||| |||||| |||| | | ||||| ||  |||||||||| || ||| | ||||||||||||||||| ||||||||    
T  5183118 agaatgatctctctggatcaataccatctgaactctctgaaggctcacaactacaacttctagatttaagggacaacaaattttcaggtaaaattcccaa 5183217  T
Q  177 ctggatggataatctctcagagtt 200  Q
     ||||||||||| |||||||||||    
T  5183218 ttggatggataagctctcagagtt 5183241  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 4856070 - 4855996
Alignment:
Q  204 tattccaattcaattgtatcgattaagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    ||||||||||||||||| ||| |||| ||||||| || | ||||||||||||||||||||| |||||||||||||    
T  4856070 tattccaattcaattgtgtcggttaaaaaagatcgacataatggacctatcacggaacatgctcaatgcttcaat 4855996  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 4856221 - 4856110
Alignment:
Q  90 ctggatctataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaactggatggataa 188  Q
    ||||||| ||||||| |||||| |||  | | ||||| ||  |||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||    
T  4856221 ctggatcaataccatctgaactctctaaaggctcacaactacaacttctagatttgagggagaacaaattttcaggtaaaattccccactggatggataa 4856122  T
Q  189 tctctcagagtt 200  Q
     || ||||||||    
T  4856121 cctatcagagtt 4856110  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 5214701 - 5214804
Alignment:
Q  98 ataccatttgaactgtctggaagttcacagctgaaacttctagacttgagg-agaacaaattttcaggtaacattcccaactggatggataatctctcag 196  Q
    ||||||| |||||| |||| | | ||||| ||  |||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||||| || ||||    
T  5214701 ataccatctgaactctctgaaggctcacaactacaacttctagatttgagggagaacaaattttcaggtaaaattccccactggatggataagctatcag 5214800  T
Q  197 agtt 200  Q
    ||||    
T  5214801 agtt 5214804  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 5214844 - 5214918
Alignment:
Q  204 tattccaattcaattgtatcgattaagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    ||||||||||||||||| ||| |||| ||||||  || | ||||||||||||||||||||| |||||||||||||    
T  5214844 tattccaattcaattgtgtcggttaaaaaagatagacataatggacctatcacggaacatgctcaatgcttcaat 5214918  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 4841682 - 4841613
Alignment:
Q  132 aacttctagacttgagg-agaacaaattttcaggtaacattcccaactggatggataatctctcagagtt 200  Q
    |||||||||| |||||| |||||||| |||||||||| |||||||| ||||||||||| |||||||||||    
T  4841682 aacttctagatttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcagagtt 4841613  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 5196578 - 5196644
Alignment:
Q  132 aacttctagacttgagg-agaacaaattttcaggtaacattcccaactggatggataatctctcaga 197  Q
    |||||||||| |||||| |||||||||||||||| || ||||||||||||||||||||  |||||||    
T  5196578 aacttctagatttgagggagaacaaattttcaggaaaaattcccaactggatggataagttctcaga 5196644  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 5183281 - 5183356
Alignment:
Q  204 tattccaattcaattgtatcgat-taagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    ||||||||||||||||| ||  | ||| |||||||||| | |||||| |||||||||||||| |||||||||||||    
T  5183281 tattccaattcaattgtgtccttctaaaaaagatcaacataatggacttatcacggaacatgctcaatgcttcaat 5183356  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 5203556 - 5203597
Alignment:
Q  235 atcaacgtgatggacctatcacggaacatgttcaatgcttca 276  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  5203556 atcaacatgatggacctatcacggaacatgctcaatgcttca 5203597  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 4841572 - 4841499
Alignment:
Q  205 attccaattcaattgtatcgattaagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    |||||||||||||||| ||   ||| ||| |||| | | |||||| |||||||||||||| |||||||||||||    
T  4841572 attccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacggaacatgctcaatgcttcaat 4841499  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 5173947 - 5174020
Alignment:
Q  205 attccaattcaattgtatcgattaagaaagatcaacgtgatggacctatcacggaacatgttcaatgcttcaat 278  Q
    |||||||||||||| | | | || | ||||||| || | ||||| ||||||||||||||| |||||||||||||    
T  5173947 attccaattcaattttgttggttcaaaaagatcgacataatggatctatcacggaacatgctcaatgcttcaat 5174020  T

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