View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_32 (Length: 271)
Name: NF2211_low_32
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 34772522 - 34772277
Alignment:
| Q |
15 |
agtttcattttgtttaattagcaagcaagagggaattaaaattcttgtgagcatcatcttctatcttataattttcattaaatcagaaatgacatgagca |
114 |
Q |
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| T |
34772522 |
agtttcattttgtttaattagcaagcaagagggaattaaaattcttgtgagcatcatcttctatcttataattttcattaaatcagaaatgacatgagca |
34772423 |
T |
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| Q |
115 |
aataaaaacatacctagctattcacctcctttattggaggaagaagcttcagccgcactagcagtagcagcggcggctctcagtttggctctctcttcgt |
214 |
Q |
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| T |
34772422 |
aataaaaacatacctagctattcacctcctttattggaggaagaagcttcagccgcactagcagtagcagcggcggctctcagtttggctctctcttcgt |
34772323 |
T |
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| Q |
215 |
tagcaacatcaactgcattagaaagtctgcaatacatttctttcat |
260 |
Q |
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| T |
34772322 |
tagcaacatcaactgcattagaaagtctgcaatacatttctttcat |
34772277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 9531826 - 9531886
Alignment:
| Q |
203 |
ctctctcttcgttagcaacatcaactgcattagaaagtctgcaatacatttctttcatctc |
263 |
Q |
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| T |
9531826 |
ctctctcttcgctagcaactgaaattgcattagaaagcctgcaatacatttctttcatctc |
9531886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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