View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2211_low_37 (Length: 258)

Name: NF2211_low_37
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2211_low_37
NF2211_low_37
[»] chr2 (9 HSPs)
chr2 (1-87)||(16657047-16657133)
chr2 (141-204)||(16656988-16657051)
chr2 (1-49)||(43625962-43626010)
chr2 (5-48)||(12235245-12235288)
chr2 (3-50)||(12244973-12245020)
chr2 (1-42)||(7542778-7542819)
chr2 (5-50)||(11999950-11999995)
chr2 (6-49)||(39373417-39373460)
chr2 (5-43)||(12258155-12258193)
[»] chr4 (2 HSPs)
chr4 (3-49)||(35133000-35133046)
chr4 (1-49)||(30775804-30775852)
[»] chr7 (8 HSPs)
chr7 (1-54)||(6790064-6790117)
chr7 (4-49)||(13333024-13333069)
chr7 (1-47)||(8629084-8629130)
chr7 (4-49)||(8585274-8585319)
chr7 (6-49)||(1302021-1302064)
chr7 (7-49)||(8667977-8668019)
chr7 (12-49)||(8647437-8647474)
chr7 (4-49)||(10493942-10493987)
[»] chr1 (1 HSPs)
chr1 (1-61)||(15595589-15595649)
[»] chr5 (1 HSPs)
chr5 (7-49)||(28220509-28220551)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16657133 - 16657047
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaacaacaataacaataataatagtaaaatcgtatcat 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657133 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaacaacaataacaataataatagtaaaatcgtatcat 16657047  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 16657051 - 16656988
Alignment:
Q  141 atcatgacatgactacaaccgctatttaaagctgtaataataatattaactataataataacaa 204  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16657051 atcatgacatgactacaaccgctatttaaagccgtaataataatattaactataataataacaa 16656988  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43625962 - 43626010
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  43625962 acagaatcactaaacttcctaccgattaacctcttagcatctggaaaaa 43626010  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 12235245 - 12235288
Alignment:
Q  5 gatcactaaacttcctaccgattaaccttttagcatctgaaaaa 48  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  12235245 gatcactaaacttcctaccaattaacctcttagcatctgaaaaa 12235288  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 12245020 - 12244973
Alignment:
Q  3 aggatcactaaacttcctaccgattaaccttttagcatctgaaaaaac 50  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||||    
T  12245020 aggatcactaaacttcctaccaattaatctcttagcatctgaaaaaac 12244973  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7542778 - 7542819
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatct 42  Q
    ||||||||||||||||||||||| |||||||| |||||||||    
T  7542778 acaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 11999950 - 11999995
Alignment:
Q  5 gatcactaaacttcctaccgattaaccttttagcatctgaaaaaac 50  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  11999950 gatcactaaacttccaaccaattaacctcttagcatctgaaaaaac 11999995  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 39373417 - 39373460
Alignment:
Q  6 atcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||    
T  39373417 atcattaaacttcctaccaattaacctcttagcatctgaaaaaa 39373460  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 12258193 - 12258155
Alignment:
Q  5 gatcactaaacttcctaccgattaaccttttagcatctg 43  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  12258193 gatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 35133000 - 35133046
Alignment:
Q  3 aggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  35133000 aggatcactaaacttcctaccaattaaccttttagcatctgaaaaaa 35133046  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30775804 - 30775852
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||| || ||||| |||||||| |||||||||||||||||||||||||    
T  30775804 acagggtcgctaaatttcctaccaattaaccttttagcatctgaaaaaa 30775852  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6790064 - 6790117
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaaca 54  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  6790064 acagaatcactaaacttcctaccaattaacctcttagcatctgaaaaaataaca 6790117  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13333069 - 13333024
Alignment:
Q  4 ggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||    
T  13333069 ggatcactaaacttcctaccaattaacctcttagcatctgaaaaaa 13333024  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8629084 - 8629130
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaa 47  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||    
T  8629084 acaggatcactaaacttcctaccaattaacctcttggcatctgaaaa 8629130  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 8585319 - 8585274
Alignment:
Q  4 ggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    |||||||||||||||||||| |||||||| || |||||||||||||    
T  8585319 ggatcactaaacttcctaccaattaacctcttggcatctgaaaaaa 8585274  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 1302021 - 1302064
Alignment:
Q  6 atcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    |||||||||||||||||| ||||| || ||||||||||||||||    
T  1302021 atcactaaacttcctaccaattaatctcttagcatctgaaaaaa 1302064  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 8667977 - 8668019
Alignment:
Q  7 tcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||||||||||||||| |||||||| |||||||||| |||||    
T  8667977 tcactaaacttcctaccaattaacctcttagcatctgcaaaaa 8668019  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 8647437 - 8647474
Alignment:
Q  12 aaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  8647437 aaacttcctaccgattaacctcttagcatctggaaaaa 8647474  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10493987 - 10493942
Alignment:
Q  4 ggatcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||||||||||||||| || |||||||| ||||||||| ||||||    
T  10493987 ggatcactaaacttcctgccaattaacctcttagcatctaaaaaaa 10493942  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15595589 - 15595649
Alignment:
Q  1 acaggatcactaaacttcctaccgattaaccttttagcatctgaaaaaacaacaacaataa 61  Q
    |||| ||||||||||||||||| |||||| || |||||||||||||||| ||||| |||||    
T  15595589 acagaatcactaaacttcctactgattaatctcttagcatctgaaaaaataacaaaaataa 15595649  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 28220509 - 28220551
Alignment:
Q  7 tcactaaacttcctaccgattaaccttttagcatctgaaaaaa 49  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  28220509 tcactaaacttcctaccaattaacctcttagcatctgaaaaaa 28220551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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