View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_4 (Length: 555)
Name: NF2211_low_4
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 14 - 539
Target Start/End: Complemental strand, 33556855 - 33556330
Alignment:
| Q |
14 |
atcatcaattaaggttatataaactgttcaatttctctttgaaaatgattccctattcctataaatggcaaaatcaaaatttgtattggttttttataat |
113 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556855 |
atcatcaattaaggttatataaactcttcaatttctctttgaaaatgattccctatacctataaatggcaaaatcaaaatttgtattggttttttataat |
33556756 |
T |
|
| Q |
114 |
aaggagattaacaattaagttgaactcacctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaataatgcaagaaaatatgagataa |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556755 |
aaggagatgaacaattaagttgaactcacctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaataatgcaagaaaatatgagataa |
33556656 |
T |
|
| Q |
214 |
ccagttatcttatgctcataaagatgagccctcttgagggtgctaccatctgcaaatgctccacctgccattttcccctaactttttgatattttttctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556655 |
ccagttatcttatgctcataaagatgagccctcttgagggtgctaccatctgcaaatgctccacctgccattttcccctaactttttgatattttttctt |
33556556 |
T |
|
| Q |
314 |
aaacaatcaattcaagtgagaaacactaaacaaaatcaaagtggatatatttagggaacagtcataagtgccaactctaatgaggattcaataaccatat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556555 |
aaacaatcaattcaagtgagaaacactaaacaaaatcaaagtggatatatttagggaacagtcataagtgccaactctaatgaggattcaataaccatat |
33556456 |
T |
|
| Q |
414 |
gagaaaaagttaatactaattgctacttgatgtttcttttatttatttcccaaaatttgcttgatttagaaaatggcattggaaggctattagtaattct |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33556455 |
gagaaaaagttaatactaattgctacttgatgtttcttttatttatttcccaaaatttgcttgatttagaaaatggcattggaaggctattagtaattct |
33556356 |
T |
|
| Q |
514 |
attttgcaagccactcaagcacaaga |
539 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
33556355 |
attttgcaagccactcaagcacaaga |
33556330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 33564073 - 33563746
Alignment:
| Q |
14 |
atcatcaattaaggttatataaactgttcaatttctctttgaaaatgattccctattcctataaatggcaaaatcaaaatttgtattggttttttataat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33564073 |
atcatcaattaaggttatataaactgttcaatttctctttgaaaatgattccctattcctataaatggcaaaatcaaaatttgtattggttttttataat |
33563974 |
T |
|
| Q |
114 |
aaggagattaacaattaagttgaactcacctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaataatgcaagaaaatatgagataa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33563973 |
aaggagattaacaattaagttgaactcacctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaataatgcaagaaaatatgagataa |
33563874 |
T |
|
| Q |
214 |
ccagttatcttatgctcataaagatgagccctcttgagggtgctaccatctgcaaatgctccacctgccattttcccctaactttttgatattttttctt |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| | |
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| T |
33563873 |
ccagttatcttatgctcataaagatgagccctcttgagggtgctaccatctgcaaatgctccacctgccatttttccctaactttttgaaatgttttcct |
33563774 |
T |
|
| Q |
314 |
aaacaatcaattcaagtgagaaacacta |
341 |
Q |
| |
|
||||||||||||||| |||||||||||| |
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| T |
33563773 |
aaacaatcaattcaattgagaaacacta |
33563746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 340 - 539
Target Start/End: Complemental strand, 33563715 - 33563519
Alignment:
| Q |
340 |
taaacaaaatcaaagtggatatatttagggaacagtcataagtgccaactctaatgaggattcaataaccatatgagaaaaagttaatactaattgctac |
439 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||| || ||| ||| |||| ||||||||||||| |||||| |
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| T |
33563715 |
taaacaaaatcaaagtggatat--ttagagaacagtcatgagtgccacctctaatgaggatttaaaaactataagagacaaagttaatactatgtgctac |
33563618 |
T |
|
| Q |
440 |
ttgatgtttcttttatttatttcccaaaatttgcttgatttagaaaatggcattggaaggctattagtaattctattttgcaagccactcaagcacaaga |
539 |
Q |
| |
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||| | ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33563617 |
ttggt-tttcttttatttattccccaaaatttgcttgatttagcaaatggcattggaaggctattaataattctattttgcaagccactcaagcacaaga |
33563519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 43379336 - 43379190
Alignment:
| Q |
138 |
ctcacctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaataatgcaagaaaatatgagataaccagttatcttatgctcataaaga |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||| || |||| |||||||||||| |||| || || || ||||| | ||||||||| |
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|
| T |
43379336 |
ctcacctgaaacaccaagatcatatccaaagagagagccaccaagagcaccaacaatgcaagaaaagatgaagtaccctgtaatcttgtattcataaaga |
43379237 |
T |
|
| Q |
238 |
tgagccctcttgagggtgctaccatctgcaaatgctccacctgccat |
284 |
Q |
| |
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|||||||| ||||| | | |||||| ||||| ||||||||||||| |
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|
| T |
43379236 |
tgagcccttttgagatttccaccatcaccaaatcctccacctgccat |
43379190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 43316714 - 43316763
Alignment:
| Q |
141 |
acctgaaacaccaagatcatatccaaatagagccccaccaagtgctccaa |
190 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||||| ||||||| |
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| T |
43316714 |
acctgaaacaccaagatcataaccaaaaagagaaccaccaagagctccaa |
43316763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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