View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2211_low_40 (Length: 251)
Name: NF2211_low_40
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_40 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 54542529 - 54542768
Alignment:
| Q |
13 |
aaaataaaggagttgaattatagattat-ctaaaacccaaaaaacaataaaattattctagggcattctatttagctacaactagaagttgcccactagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54542529 |
aaaataaaggagttgaattatagattatactaaaacccaaaaaacaataaaattattctagggcattctatttagctacaactagaagttgcccagtagt |
54542628 |
T |
|
| Q |
112 |
aaattttgtggacatattagttcaccacgtctactcaatcttcaaactattcaattgaaagtattatataaataaaatattatcatcagtttagactgtt |
211 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54542629 |
acattttgtggacatattagttcatcacgtctactcaatcttcaaactattcagttgaaagtattatataaataaaatattatcatcagtttagactgtt |
54542728 |
T |
|
| Q |
212 |
atttactttcttatcaaaaaacttttactttaattaacat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54542729 |
atttactttcttatcaaaaaacttttactttaattaacat |
54542768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University