View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_45 (Length: 239)
Name: NF2211_low_45
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 47341653 - 47341477
Alignment:
| Q |
1 |
gtgttaccctgttaaatggtttcgctttacggtaaatttcagaggaaaaaacatattgggagtcaaaacttcnnnnnnntgatgtcaaaatcgta-aatg |
99 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
47341653 |
gtgtcaccctgttaaatggtttcgctttacggtaaatttcagaggaaaaaacatattgggagtcaaaacttcaaaaaaatgatgtcaaaatcgtacaatg |
47341554 |
T |
|
| Q |
100 |
acaaagacttgaaaggtcagagagtacatttgatcctacttttttatggtgataaatactccaattctagtctttac |
176 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47341553 |
acaaagacttgaaaggtcaaagagtacatttgatcctacttttttatggtgataaatactccaattctagtctttac |
47341477 |
T |
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