View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_50 (Length: 228)
Name: NF2211_low_50
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 43862085 - 43861958
Alignment:
| Q |
48 |
agttaatgaccaaatattatgaagttcattactgaatctactaactgtgtttacaatacagcaagtgatctgcgcgagaccgatcacctatggagtatat |
147 |
Q |
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| T |
43862085 |
agttaatgaccaaatattatgaagttcattctagaatctactaacggtgtttacaatacagcaagtgatttgcgtgag-ccaataacctatggag----t |
43861991 |
T |
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| Q |
148 |
atgccc-aaaaatttaatgcctccttttaatga |
179 |
Q |
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| T |
43861990 |
atgcccaaaaaatttaatgcctccttttaatga |
43861958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 43849177 - 43849118
Alignment:
| Q |
29 |
atggtgtgtcgaaaaatcaagttaatgaccaaatattatgaagttcattactgaatctac |
88 |
Q |
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| T |
43849177 |
atggtgtgaggaaaaatcaagttaatgaccaaatattatgaagttcattactgaatctac |
43849118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 43872249 - 43872130
Alignment:
| Q |
30 |
tggtgtgtcgaaaaatcaagttaatgaccaaatattatgaagttcattactgaatctactaact----gtgtttacaatacagcaagtgatctgcgcgag |
125 |
Q |
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| T |
43872249 |
tggtgtgaagaaaaattaagttcatgaccaaatattatgaagttcattgtagaatctactaacaaacagtggttacaatacagcaagtgatttgcatcag |
43872150 |
T |
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| Q |
126 |
accgatcacctatggagtat |
145 |
Q |
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| T |
43872149 |
accaatcacctgtggagtat |
43872130 |
T |
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