View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_52 (Length: 219)
Name: NF2211_low_52
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 36769912 - 36770094
Alignment:
| Q |
16 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatatgccacttctattctacaatgtctctctggaagataaagaaagatacacactacaa |
115 |
Q |
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| T |
36769912 |
attatacttctgagggtaaaaagggaaaaatatcagctaacatattccacttttatactacaatgtctctctggaagataaagaaagatacacactacaa |
36770011 |
T |
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| Q |
116 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctc |
198 |
Q |
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| T |
36770012 |
cctcatgctcggcttgaactagagagagacagaaaaccaaagaggctaaggtgaagttttttgaaatcatcatcttctccctc |
36770094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 36746538 - 36746605
Alignment:
| Q |
75 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
142 |
Q |
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| T |
36746538 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctccgcttgaactagagaga |
36746605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 36765323 - 36765390
Alignment:
| Q |
75 |
acaatgtctctctggaagataaagaaagatacacactacaacctcatgctcggcttgaactagagaga |
142 |
Q |
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| T |
36765323 |
acaatgtctctctgcaaaacaaagaaagagacacacaacagcctcatgctcagcttgaattagagaga |
36765390 |
T |
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