View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_55 (Length: 206)
Name: NF2211_low_55
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20480920 - 20480784
Alignment:
| Q |
1 |
tagggctctctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtggatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20480920 |
tagggctctctttgaactcttatatagtttgattagatttgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtgaatt |
20480821 |
T |
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| Q |
101 |
ctgtctagtttgaagaggttttggcttagtccccctc |
137 |
Q |
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| T |
20480820 |
ctgtctagtttgaagaggttttggcttagtccccctc |
20480784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 20480762 - 20480715
Alignment:
| Q |
152 |
tgtcttatctattttgcattttgaggttgtatccctttgctactcctc |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20480762 |
tgtcttatctattttgcattttgaggttgtatctctttgctactcctc |
20480715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 2015573 - 2015709
Alignment:
| Q |
1 |
tagggctctctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtggatt |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| | |||||||||||| |||| |||||||||| |||||||||||||||||||||||||| || |
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| T |
2015573 |
taggactctctttgaactcttatatagtttggttagatttgacctcctttattagagagccttttgtgagaaatcttatgggattgcctaattgtggttt |
2015672 |
T |
|
| Q |
101 |
ctgtctagtttgaagaggttttggcttagtccccctc |
137 |
Q |
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| T |
2015673 |
ttgtctagtttggggaggttttgacatagtccccctc |
2015709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 2015729 - 2015773
Alignment:
| Q |
154 |
tcttatctattttgcattttgaggttgtatccctttgctactcct |
198 |
Q |
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| T |
2015729 |
tcttatctaggttacattttgaggttgtatctctttgctactcct |
2015773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 8650333 - 8650200
Alignment:
| Q |
5 |
gctctctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtggattctgt |
104 |
Q |
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||||||||||||||||||||||||||| ||||| | |||||||||||| | |||| ||||||||| ||||||||||||||||||||||||| | || | | |
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| T |
8650333 |
gctctctttgaactcttatatagtttggttagacttgccctcctttatgagagagccttttgtgaagaatcttatgggattgcctaattgttgctttttt |
8650234 |
T |
|
| Q |
105 |
ctagtttgaagaggttttggcttagtccccctcc |
138 |
Q |
| |
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|||| ||| ||||||||||| |||||||||||| |
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| T |
8650233 |
ctagattggggaggttttggcctagtccccctcc |
8650200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 20471333 - 20471458
Alignment:
| Q |
9 |
tctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtggattctgtctag |
108 |
Q |
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||||| ||||||||||||||||| ||||||| |||||| ||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||| ||||||| |
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| T |
20471333 |
tctttaaactcttatatagtttggttagatttgccctcgtttattagagagccttttgtgagaaatcttatgtgattgcctacttgtggattttgtctag |
20471432 |
T |
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| Q |
109 |
tttgaagaggttttggcttagtcccc |
134 |
Q |
| |
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|||| ||||||||||| |||||||| |
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| T |
20471433 |
tttggggaggttttggcctagtcccc |
20471458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13960964 - 13961092
Alignment:
| Q |
1 |
tagggctctctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatcttatgggattgcctaattgtggatt |
100 |
Q |
| |
|
|||| ||| ||| |||| ||||||||||||| ||||||| ||||| ||||||| |||| |||| |||||||| |||| ||| ||||||||||||||||| |
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| T |
13960964 |
taggactcgcttggaacacttatatagtttggttagatttaccctcgtttattagagagccttt-gtgaggaaacttaaggggttgcctaattgtggatt |
13961062 |
T |
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| Q |
101 |
ctgtctagtttgaagaggttttggcttagt |
130 |
Q |
| |
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||||||||||| || |||| |||||||| |
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| T |
13961063 |
ttgtctagtttggggaagtttcggcttagt |
13961092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 23914078 - 23914149
Alignment:
| Q |
7 |
tctctttgaactcttatatagtttgattagattcgccctcctttattaaagagtcttttgtgaggaatctta |
78 |
Q |
| |
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||||||||||| ||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||| |
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| T |
23914078 |
tctctttgaacacttatatagtttggttagatttttcctcctttattagagagccttttgtgaggaatctta |
23914149 |
T |
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