View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_7 (Length: 464)
Name: NF2211_low_7
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 188 - 448
Target Start/End: Complemental strand, 25024566 - 25024307
Alignment:
| Q |
188 |
tacataaaatagtcatatatatatgggcataggaatcgtagaaaaagttgatacactatctttttgtttttccaactaatgttaatgttgatgatgcccc |
287 |
Q |
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| T |
25024566 |
tacataaaatagtcatatatat--gggcataggaatcgtagaaaaagttgatacactatctttttgtttttccaactaatgttaatgttgatgatgcccc |
25024469 |
T |
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| Q |
288 |
tagtatatacactaaattaggatagtttcatttatgaagaaaaattcaactaaatgaaagtgttgttatcattgcttatgaaaatagatgtgaatcttcc |
387 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25024468 |
tagtatatacactaaattaggatagtttca-ttatgaagaaaaattcaactaaatgaaagtgttgttatcattgcttatgaaaatagatgtgaatcttcc |
25024370 |
T |
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| Q |
388 |
tccc--atcctaacttattatttctattttctattgttgcttttgaaatttgatgttaacaat |
448 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25024369 |
tcccatatcctaacttattatttctattttctattgttgcttttgaaatttgatgttaacaat |
25024307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 25024744 - 25024626
Alignment:
| Q |
10 |
agatgaagttgtatccaagttggtgtgggaagaaagactaaattacgtgcccgaatcagaagttgccatgtgatgatcttatataagtaagactcgtggg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25024744 |
agatgaagttgtatccaagttggtgtgggaagaaagactaaattacgtgcccgaatcagaagttgccatgtgatgatcttatataagtaagactagtggg |
25024645 |
T |
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| Q |
110 |
tatttgatggagaaattag |
128 |
Q |
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||||||||||| ||||||| |
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| T |
25024644 |
tatttgatggaaaaattag |
25024626 |
T |
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