View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_8 (Length: 438)
Name: NF2211_low_8
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 48 - 319
Target Start/End: Complemental strand, 43614885 - 43614617
Alignment:
| Q |
48 |
aatagggtcaaaataattcagaattcaacaggaggtaaataaagttagccaagaattattccatcaataaatccatcaattcttcaacgattcgttattg |
147 |
Q |
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| T |
43614885 |
aatagggtcaaaataattcagaattcaacgggaggtaaataaagttagccaagaattattccatcaataaatccatcaattcttcaacgattcgttattg |
43614786 |
T |
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| Q |
148 |
aataaaattcattaaacacctaagttcgatcacttgattataaataggagnnnnnnnnnnncacgaacatgctttgtaaaataaataaaacttacctttt |
247 |
Q |
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| T |
43614785 |
aataaaattcattaaacacctaagttcgatcacttgattgtaaataagag--tttttttttcacgaacatgctttgtaaaataaataaaacttaccgttt |
43614688 |
T |
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| Q |
248 |
gttgctaatatgtcaaagttttataattaagagtttcaaaaacaagttgtcatatctaatttttctttcttg |
319 |
Q |
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| T |
43614687 |
gttgctaatatgtcaaag-tttataaataagagtttcaaaaacaatttgtcatatctaatttttctttcttg |
43614617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 423
Target Start/End: Complemental strand, 43614552 - 43614513
Alignment:
| Q |
384 |
aacatgatggttatagcatgactgatgtgtcagtgttatt |
423 |
Q |
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| T |
43614552 |
aacatgatggttatagcatgactgatgtgtcagtgttatt |
43614513 |
T |
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