View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2211_low_9 (Length: 434)
Name: NF2211_low_9
Description: NF2211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2211_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 40 - 427
Target Start/End: Complemental strand, 2564622 - 2564241
Alignment:
| Q |
40 |
aaattactgcattattctcctgtttgttccnnnnnnnnnatagtaatttgtgtgttacacgattgaatgtttgattgaaaaattgtatgattgatnnnnn |
139 |
Q |
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| T |
2564622 |
aaattactgcattattctcctgtttgttccttttttt--atcataatttgtgtgttgcacgattgaatgtttgattgaaaaattgtatgactgataaaaa |
2564525 |
T |
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| Q |
140 |
nnnttgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattcctatgtttgtaaccatttaatttttctttcttggtaatactacctt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
2564524 |
aaattgaatttgttaattggaaaagaaaaaacatgttgattgaaggataaattcctatgtatgtaaccattcaatttttctttcttggtaatactacctt |
2564425 |
T |
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| Q |
240 |
taatttgttcaatcaacctaagaacaaattcaa-nnnnnnncgtccaatagaagatataagtttgtgtgtttgtttgatactaagttcctatcatgtcag |
338 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2564424 |
taatttgttcaatcaacctaagaacaaattcaattttttttcgtccaatggaagatataagtgtgtgtgtttgtttgatac-----tcctatcatgtcag |
2564330 |
T |
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| Q |
339 |
tatcatatcgtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatctctctg |
427 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2564329 |
tatcacatcgtatccttattcaacttcttattctatttcatatctatcttatcatgcacacccaacaaccttaaatttttatcactctg |
2564241 |
T |
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